CB250315
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB250315 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1) HSP 1 Score: 425.631 bits (1093), Expect = 1.278e-118 Identity = 197/240 (82.08%), Postives = 223/240 (92.92%), Query Frame = 1 Query: 1 FKAAIDHLSRFQSEGGSQLFVPPGKWLTGSFNLTSHFTLFLHKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGELWWRKFRAGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVRPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQD 720 F+ A+ LS++ SEGG+QL+VP GKWLTGSF+LTSHFTLFLH+DAVLLASQD +WPVI+PLPSYGRGRD GRY+SLIFGTNLTDV+ITGDNGTIDGQG LWW++F G+LKYTRPYLIE+M+S +IQISNLTL+NSPSWNV PVYS ++++QGITILAPV SPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWD+YGIAYGMPTKQL+IRRLTCISP+SAVIALGSEMSGGIQD Sbjct: 82 FQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSHFTLFLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTIDGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLNSPSWNVHPVYSRNILIQGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSEMSGGIQD 321
BLAST of CB250315 vs. ExPASy Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 8.247e-17 Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = 1 Query: 238 IFGTNLTDVVITGDNGTIDGQGELWWRKFRAGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVRPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 594 I T++ +VI GD G I+GQG WW E K +RP ++ N+++S LT ++SP ++ + V + + I AP +SPNTDGI+ + +N I+DC I +GDDC+A+ SG Sbjct: 107 ILFTDIEGLVIEGD-GEINGQGSSWW------EHKGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG 218
BLAST of CB250315 vs. ExPASy Swiss-Prot
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.555e-15 Identity = 49/124 (39.52%), Postives = 70/124 (56.45%), Query Frame = 1 Query: 253 LTDVVITGDNGTIDGQGELWWRKFRAGELKYT----------RPYLIEIMHSQNIQISNLTLINSPSWNVRPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 594 LTD + G G IDGQG+ WW AG+ K RP I+I +S+++ + LTL+NSP +++ V +QG+ I AP SPNTDGI+ + IE C I +GDDC+A+ +G Sbjct: 145 LTDFNLMG-TGVIDGQGQQWW----AGQCKVVNGRTVCNDRNRPTAIKIDYSKSVTVKELTLMNSPEFHLVFGECEGVKIQGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTG 263
BLAST of CB250315 vs. ExPASy Swiss-Prot
Match: PGLR1_PECCC (Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum GN=peh PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.555e-15 Identity = 68/196 (34.69%), Postives = 94/196 (47.96%), Query Frame = 1 Query: 37 SEGGSQLFVPPGKWLTGSFNLTSHFTLFLHKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGEL--------WW---RKFRAGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVRPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKS 591 S G S +F L+G +L S +L + K L A + K + E PS DT G + I T+ T+ I G GTIDGQG + WW + +LK P LI+I S+N + N++LINSP+++V TI P T+ NTDGI+P S N I I +GDD VA+K+ Sbjct: 71 SAGSSSVF------LSGPLSLPSGVSLLIDKGVTLRAVNNAKSF---ENAPSSCGVVDTNGKGCDAFITATSTTNSGIYGP-GTIDGQGGVKLQDKKVSWWDLAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAHSNISTGDDNVAIKA 256
BLAST of CB250315 vs. ExPASy Swiss-Prot
Match: PGLR2_JUNAS (Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.933e-14 Identity = 55/142 (38.73%), Postives = 72/142 (50.70%), Query Frame = 1 Query: 253 LTDVVITGDNGTIDGQGELWWR---KFRAGELKYT---RPYLIEIMHSQNIQISNLTLINSPSWNVRPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTC 660 LTD + G G IDGQG WW K G RP I+I S+++ + LTL NSP +++ V +QGI I AP SPNTDGI+ + IE C I +GDDCVAV +G + + I+ LTC Sbjct: 146 LTDFNLMG-TGVIDGQGNRWWSDQCKTINGRTVCNDKGRPTAIKIDFSKSVTVKELTLTNSPEFHLVFGECDGVKIQGIKIKAPRDSPNTDGIDIFASKRFEIEKCTIGTGDDCVAVGTG-----------SSNITIKDLTC 275
BLAST of CB250315 vs. ExPASy Swiss-Prot
Match: PGLR2_PECCC (Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum GN=pehA PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.831e-14 Identity = 62/183 (33.88%), Postives = 88/183 (48.09%), Query Frame = 1 Query: 76 WLTGSFNLTSHFTLFLHKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGEL--------WWR---KFRAGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVRPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKS 591 +L+G +L S +L + K L A + K + E PS D G + I + T+ I G GTIDGQG + WW + +LK P LI+I S+N + N++LINSP+++V TI P T+ NTDGI+P S N I I +GDD VA+K+ Sbjct: 78 FLSGPLSLPSGVSLLIDKGVTLRAVNNAKSF---ENAPSSCGVVDKNGKGCDAFITAVSTTNSGIYGP-GTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKA 256
BLAST of CB250315 vs. ExPASy Swiss-Prot
Match: PGLR_RHIRD (Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.483e-13 Identity = 42/121 (34.71%), Postives = 60/121 (49.59%), Query Frame = 1 Query: 361 IEIMHSQNIQISNLTLINSPSWNVRPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG-WDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQD 720 + ++ Q+ T+ N+ SW + P + TI+AP SPNTDG NP+SC N I GDDC+AVK+G G + + I R + P + +GSEMSGG+ D Sbjct: 25 LHLVSCHKTQLLGFTIRNAASWTIHPQGCEDLTAAASTIIAPHDSPNTDGFNPESCRNVMISGVRFSVGDDCIAVKAGKRGPDGEDDHLAETRGITVRHCLMQPGHGGLVIGSEMSGGVHD 145
BLAST of CB250315 vs. ExPASy Swiss-Prot
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13 Identity = 36/110 (32.73%), Postives = 60/110 (54.55%), Query Frame = 1 Query: 274 GDNGTIDGQGELWWR---KFRAGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVRPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 594 GD G +DG GE WW+ K + P + +S+++ + NL + N+ + S+V V + + AP SPNTDGI+ + N R+ + I +GDDC++++SG Sbjct: 163 GDTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSESIIGTGDDCISIESG 272
BLAST of CB250315 vs. ExPASy Swiss-Prot
Match: PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12 Identity = 38/114 (33.33%), Postives = 67/114 (58.77%), Query Frame = 1 Query: 259 DVVITGDNGTIDGQGELWWRKFRAGELKYTR--PYLIEIMHSQNIQISNLTLINSPSWNVRPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 594 ++V+TG GT G+GE W+ G+ P ++ + +N++I+ ++ +N+ ++++ V + +V +Q I + AP SPNTDGI+ + N I D I +GDDCV+V G Sbjct: 137 NLVLTG-TGTFHGKGEAVWKADGCGKKVQCNLPPTSLKFRNMKNVEINGISSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTDGIHLSNADNVSILDSTIATGDDCVSVGRG 249
BLAST of CB250315 vs. ExPASy Swiss-Prot
Match: PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11 Identity = 54/195 (27.69%), Postives = 90/195 (46.15%), Query Frame = 1 Query: 43 GGSQLFVPPGKWLTGSFNLTSHFT--LFLHKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGELWWRKFRAGELKYT---RPYLIEIMHSQNIQISNLTLINSPSWNVRPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGI 612 G + +P G +L G N T + + D LLA+ D ++ E G + ++ NL VITG G +DGQG W K + KY P + + N ++S +TL+NS +++ +++++ +T+ AP SPNTDGI+ + I + I GDDC+++ G + I Sbjct: 72 GKQTILIPKGDFLVGQLNFTGPCKGDVTIQVDGNLLATTDLSQYK--------------EHGNWIEILRVDNL---VITG-KGNLDGQGPAVWSKNSCTK-KYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYQCKNMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNI 247 The following BLAST results are available for this feature:
BLAST of CB250315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
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Sequences
The
following sequences are available for this feature:
EST sequence >CB250315 ID=CB250315; Name=CB250315; organism=Citrus sinensis; type=EST; length=721bpback to top |