CB250322
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB250322 vs. ExPASy Swiss-Prot
Match: FDFT_NICBE (Squalene synthetase OS=Nicotiana benthamiana PE=2 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 2.288e-44 Identity = 87/118 (73.73%), Postives = 98/118 (83.05%), Query Frame = 3 Query: 3 MSVLRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSYIIQSGLRYSSTM 356 MS LRD +IFRFCAIPQ+MAIGTLA+CY+NIEVFRGVVKMRRGLTAKVIDRT + DVY AF+DFS +LK K+N NDPNATKTL R+E I K C DSG LNKRKSYII+S YS + Sbjct: 274 MSALRDPSIFRFCAIPQVMAIGTLAMCYDNIEVFRGVVKMRRGLTAKVIDRTRTIADVYGAFFDFSCMLKSKVNNNDPNATKTLKRLEVILKTCRDSGTLNKRKSYIIRSEPNYSPVL 391
BLAST of CB250322 vs. ExPASy Swiss-Prot
Match: FDFT_ARATH (Squalene synthetase OS=Arabidopsis thaliana GN=SQS1 PE=2 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 1.063e-41 Identity = 82/111 (73.87%), Postives = 94/111 (84.68%), Query Frame = 3 Query: 3 MSVLRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSYIIQSG 335 M LRD +IFRFCAIPQIMAIGTLALCYNN +VFRGVVK+RRGLTAKVIDRT M DVY AFYDFS +LK K++KNDPNA+KTL+R+EA+QK C D+GVL RKSY+ G Sbjct: 276 MVSLRDPSIFRFCAIPQIMAIGTLALCYNNEQVFRGVVKLRRGLTAKVIDRTKTMADVYGAFYDFSCMLKTKVDKNDPNASKTLNRLEAVQKLCRDAGVLQNRKSYVNDKG 386
BLAST of CB250322 vs. ExPASy Swiss-Prot
Match: FDFT_DICDI (Squalene synthetase OS=Dictyostelium discoideum GN=fdfT PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.764e-20 Identity = 45/98 (45.92%), Postives = 68/98 (69.39%), Query Frame = 3 Query: 3 MSVLRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVID--RTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMD 290 MS L++ + FCAIPQ+MAIGTL CYNN VF GVVK+R+G A ++D ++ +T Y F+ F+N ++ K+ NDP+A KT+ +E+I+K C++ Sbjct: 277 MSRLKNPQVINFCAIPQVMAIGTLNACYNNYNVFTGVVKIRKGQRALIVDAIQSKGLTATYELFFKFANEMRHKVPPNDPSAKKTIQHLESIEKLCIE 374
BLAST of CB250322 vs. ExPASy Swiss-Prot
Match: FDFT_MOUSE (Squalene synthetase OS=Mus musculus GN=Fdft1 PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 1.308e-15 Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 3 Query: 3 MSVLRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSY 320 +S LR+ ++F FCAIPQ+MAI TLA CYNN +VF+GVVK+R+G ++ NM V Y + + +I +DP+++KT + I+ + + L R Y Sbjct: 277 LSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIYQYIEEIYHRIPNSDPSSSKTKQVISKIRTQNLPNCQLISRSHY 382
BLAST of CB250322 vs. ExPASy Swiss-Prot
Match: FDFT_RAT (Squalene synthetase OS=Rattus norvegicus GN=Fdft1 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.709e-15 Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = 3 Query: 3 MSVLRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSY 320 +S LR+ ++F FCAIPQ+MAI TLA CYNN +VF+GVVK+R+G ++ NM V Y + + ++ +DP+A+K + I+ + + L R Y Sbjct: 277 LSRLRNQSVFNFCAIPQVMAIATLAACYNNHQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIYQYIEEIYHRVPNSDPSASKAKQLISNIRTQSLPNCQLISRSHY 382
BLAST of CB250322 vs. ExPASy Swiss-Prot
Match: FDFT_BOVIN (Squalene synthetase OS=Bos taurus GN=FDFT1 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 2.232e-15 Identity = 42/106 (39.62%), Postives = 62/106 (58.49%), Query Frame = 3 Query: 3 MSVLRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSY 320 +S LR+ +IF FCAIPQ+MAI TLA CYNN +VF+GVVK+R+G ++ NM V + + + +I +DP +TKT + I+ + + L R Y Sbjct: 277 LSRLRNQSIFNFCAIPQVMAIATLAACYNNQQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIHQYMEEIYHRIPNSDPCSTKTQQIISTIRTQNLPNCQLVSRSHY 382
BLAST of CB250322 vs. ExPASy Swiss-Prot
Match: FDFT_PONAB (Squalene synthetase OS=Pongo abelii GN=FDFT1 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 2.915e-15 Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = 3 Query: 3 MSVLRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSY 320 +S LR+ ++F FCAIPQ+MAI TLA CYNN +VF+G VK+R+G ++ NM V Y + + +I +DP+++KT + I+ + + L R Y Sbjct: 277 LSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYHRIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHY 382
BLAST of CB250322 vs. ExPASy Swiss-Prot
Match: FDFT_HUMAN (Squalene synthetase OS=Homo sapiens GN=FDFT1 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 2.915e-15 Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = 3 Query: 3 MSVLRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSY 320 +S LR+ ++F FCAIPQ+MAI TLA CYNN +VF+G VK+R+G ++ NM V Y + + +I +DP+++KT + I+ + + L R Y Sbjct: 277 LSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYHRIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHY 382
BLAST of CB250322 vs. ExPASy Swiss-Prot
Match: FDFT_USTMA (Squalene synthetase OS=Ustilago maydis GN=ERG9 PE=3 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 2.728e-13 Identity = 35/94 (37.23%), Postives = 59/94 (62.77%), Query Frame = 3 Query: 3 MSVLRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKAC 284 +++L++ ++F FCAIPQ+MAI TL L +NN +VF+ VK+R+G+ +I R N DV F +S + +++ DPN T+ + I++ C Sbjct: 309 LALLKEQSVFNFCAIPQVMAIATLELMFNNPDVFKKNVKIRKGVAVGLILRAVNPRDVAYTFLHYSRKMHARLSPADPNFTRWSVELARIEQWC 402
BLAST of CB250322 vs. ExPASy Swiss-Prot
Match: FDFT_CANAL (Squalene synthetase OS=Candida albicans GN=ERG9 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.078e-13 Identity = 35/94 (37.23%), Postives = 57/94 (60.64%), Query Frame = 3 Query: 3 MSVLRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKAC 284 +S+++D + F FCAIPQ+MA+ TLA YNN +V GVVK+R+G T ++I + + V F ++ ++ K + DPN K + I++ C Sbjct: 288 LSLVKDPSSFSFCAIPQVMAVATLAEVYNNPKVLHGVVKIRKGTTCRLILESRTLPGVVKIFKEYIQVINHKSSVRDPNYLKIGIKCGEIEQYC 381 The following BLAST results are available for this feature:
BLAST of CB250322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB250322 ID=CB250322; Name=CB250322; organism=Citrus sinensis; type=EST; length=395bpback to top |