CB250335
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB250335 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2) HSP 1 Score: 145.591 bits (366), Expect = 7.476e-35 Identity = 75/116 (64.66%), Postives = 82/116 (70.69%), Query Frame = 2 Query: 62 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARXXXXXXXXXXXXXXXXXXXXXXXXXXXXNANPLDLFPQGLPNMGSNAGA 409 YGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY+GIPEQ VPPVAR NANPLDLFPQGLPN+G N GA Sbjct: 174 YGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVAR--PPASAGQPANPPAQTQQPAAAPASGPNANPLDLFPQGLPNVGGNPGA 287
BLAST of CB250335 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2) HSP 1 Score: 140.198 bits (352), Expect = 3.141e-33 Identity = 72/123 (58.54%), Postives = 83/123 (67.48%), Query Frame = 2 Query: 41 ASMTVQ*YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARXXXXXXXXXXXXXXXXXXXXXXXXXXXXNANPLDLFPQGLPNMGSNAGA 409 AS+ YGQAASNLVAG+ LE+TVQQILDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+ NANPL+LFPQG+P + AGA Sbjct: 128 ASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGA 250
BLAST of CB250335 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2) HSP 1 Score: 116.316 bits (290), Expect = 4.857e-26 Identity = 61/114 (53.51%), Postives = 71/114 (62.28%), Query Frame = 2 Query: 62 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARXXXXXXXXXXXXXXXXXXXXXXXXXXXXNANPLDLFPQGLPNMGSNA 403 YGQA SNLVAGSNLEAT+Q IL+MGGG WDR+ V+ AL AA+NNPERAVEYLYSG+PEQ +P NA+PLDLFPQ LPN ++A Sbjct: 145 YGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDIP--VPPPSIQPANPTQASQATQPAAPSILSSGPNASPLDLFPQALPNASTDA 256
BLAST of CB250335 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2) HSP 1 Score: 107.071 bits (266), Expect = 2.947e-23 Identity = 56/105 (53.33%), Postives = 66/105 (62.86%), Query Frame = 2 Query: 62 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARXXXXXXXXXXXXXXXXXXXXXXXXXXXXNANPLDLFPQ 376 YGQAAS LV+GS++E VQQI++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE +P N++PLDLFPQ Sbjct: 133 YGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIPAT----------NLSGVGSGRELTAPPPSGGPNSSPLDLFPQ 227
BLAST of CB250335 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3) HSP 1 Score: 105.145 bits (261), Expect = 1.120e-22 Identity = 60/108 (55.56%), Postives = 71/108 (65.74%), Query Frame = 2 Query: 62 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARXXXXXXXXXXXXXXXXXXXXXXXXXXXXNANPLDLFPQ 376 YGQAAS LV+GS+LE VQQI++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ N++PLDLFPQ Sbjct: 135 YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQ------------IAGSGAAPVAPASGGPNSSPLDLFPQ 230 The following BLAST results are available for this feature:
BLAST of CB250335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB250335 ID=CB250335; Name=CB250335; organism=Citrus sinensis; type=EST; length=411bpback to top |