CB250339
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX36_MOUSE (Probable ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=2 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 1.100e-31 Identity = 72/153 (47.06%), Postives = 100/153 (65.36%), Query Frame = 3 Query: 24 LMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYP--KDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 476 L+ YQ+PE+ R PL ELCLQIK+L LG I FLS+ ++PP EA+ +I L E+ A++ EELTPLG HLA+LPV+ IGKM+LFG +F CL P+L+I+A LS+K PF+ P K++ + R +LA T+SDHL ++ Sbjct: 615 LLDDYQLPEILRTPLEELCLQIKILRLGGIAYFLSRLMDPPSNEAVVLSIKHLMELSALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAASLSFKDPFVIPLGKEKIADARRKELA--------------KETRSDHLTVV 753
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX36_HUMAN (Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 1.437e-31 Identity = 70/151 (46.36%), Postives = 99/151 (65.56%), Query Frame = 3 Query: 24 LMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 476 L+ YQ+PE+ R PL ELCLQIK+L LG I FLS+ ++PP EA+ +I L E+ A++ EELTPLG HLA+LPV+ IGKM+LFG +F CL P+L+I+A LS+K PF+ P +++ + + L D T+SDHL ++ Sbjct: 622 LLDDYQLPEILRTPLEELCLQIKILRLGGIAYFLSRLMDPPSNEAVLLSIRHLMELNALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAASLSFKDPFVIPLGKEKIADARRKELAKD------------TRSDHLTVV 760
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX29_MOUSE (ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=2 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 4.623e-30 Identity = 68/135 (50.37%), Postives = 95/135 (70.37%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDE-ELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLAL 404 TR R+E + Y VPE+ R+PL ELCL I LG + FLSKAL+PP+ + I+ A+++L ++GA E +E +LTPLG HLA LPV+V IGKM++FG IFGCL P+ +++A ++ KSPFI P K + AK +L Sbjct: 994 TRERFEGFL-DYSVPEILRVPLEELCLHIMKCDLGSPEDFLSKALDPPQLQVISNAMNLLRKIGACEPNEPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLEPVATLAAVMTEKSPFITPIGRKDEADLAKSSL 1127
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX29_HUMAN (ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2) HSP 1 Score: 130.183 bits (326), Expect = 4.623e-30 Identity = 69/135 (51.11%), Postives = 95/135 (70.37%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDE-ELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLAL 404 TR R+E M Y VPE+ R+PL ELCL I +LG + FLSKAL+PP+ + I+ A+++L ++GA E +E +LTPLG HLA LPV+V IGKM++FG IFGCL P+ +++A ++ KSPF P K + AK AL Sbjct: 995 TRERFEGFM-DYSVPEILRVPLEELCLHIMKCNLGSPEDFLSKALDPPQLQVISNAMNLLRKIGACELNEPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLDPVATLAAVMTEKSPFTTPIGRKDEADLAKSAL 1128
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX57_HUMAN (Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57 PE=1 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 1.030e-29 Identity = 64/135 (47.41%), Postives = 92/135 (68.15%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLL---SLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKL 398 T H Y + Q+PE+QR+PL +LCL+IK+L S ++ S+ +EPP +++ + L ++GA+ DE LTPLG+HLA LPVDV IGK+MLFG IF CL P L+I+A L++KSPF+ P D+K+ + KL Sbjct: 978 TSHHYNHQLLKQQLPEIQRVPLEQLCLRIKILEMFSAHNLQSVFSRLIEPPHTDSLRASKIRLRDLGALTPDERLTPLGYHLASLPVDVRIGKLMLFGSIFRCLDPALTIAASLAFKSPFVSPWDKKEEANQKKL 1112
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX29_XENLA (ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.030e-29 Identity = 67/135 (49.63%), Postives = 93/135 (68.89%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIE-GDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLAL 404 TR R+E M Y VPE+ R+PL ELCL I LG + FLSKAL+PP+ + I+ A+S+L ++GA E +LTPLG HLA LPV+V IGKM++FG IFGCL + +++A ++ KSPF+ P EK + AK ++ Sbjct: 990 TRERFESFME-YSVPEILRVPLEELCLHIMKCDLGSPEDFLSKALDPPQLQVISNAMSLLRKIGACELSQPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLDAVATLAATMTEKSPFVTPIGEKDRADLAKSSM 1123
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX57_MOUSE (Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57 PE=2 SV=2) HSP 1 Score: 126.331 bits (316), Expect = 6.675e-29 Identity = 63/135 (46.67%), Postives = 92/135 (68.15%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLL---SLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKL 398 T H Y + Q+PE+QR+PL +LCL+IK+L S ++ S+ +EPP +++ + L ++GA+ DE+LTPLG+HLA LPVDV IGK+ML G IF CL P L+I+A L++KSPF+ P D+K+ + KL Sbjct: 980 TSHHYNHQLLKQQLPEIQRVPLEQLCLRIKILEMFSTHNLQSVFSRLIEPPHIDSLRASKVRLRDLGALTPDEKLTPLGYHLASLPVDVRIGKLMLLGSIFRCLDPALTIAASLAFKSPFVSPWDKKEEANQKKL 1114
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: YTDC2_MOUSE (Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 7.904e-22 Identity = 62/160 (38.75%), Postives = 92/160 (57.50%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKI--FLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 476 +R R++ ++ +Q PE+ RMPL ELCL KLL+ I FL KA EPP + A+ +L + A++ E+LT LG+HLA LPV+ +GKM+L + CL PIL+I+ L+Y+ PF+ P Q + A+L K + T SDH+ L+ Sbjct: 768 SRLRFQNMLE-FQTPELLRMPLQELCLHTKLLAPVNCTIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQK----RAAMLCRK------RFTAGTFSDHMALL 916
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: YTDC2_HUMAN (Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2 PE=1 SV=2) HSP 1 Score: 100.138 bits (248), Expect = 5.123e-21 Identity = 54/127 (42.52%), Postives = 79/127 (62.20%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKI--FLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQ 377 +R R++ ++ +Q PE+ RMPL ELCL KLL+ I FL KA EPP + A+ +L + A++ E+LT LG+HLA LPV+ +GKM+L + CL PIL+I+ L+Y+ PF+ P Q Sbjct: 753 SRLRFQNMLE-FQTPELLRMPLQELCLHTKLLAPVNCPIADFLMKAPEPPPALIVRNAVQMLKTIDAMDTWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQ 878
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX34_MOUSE (Probable ATP-dependent RNA helicase DHX34 OS=Mus musculus GN=Dhx34 PE=2 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 8.738e-21 Identity = 54/128 (42.19%), Postives = 80/128 (62.50%), Query Frame = 3 Query: 33 PYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDK 416 PY VPE++R+ L L LQ+K +S+G + F +EPP ++ TAI L E GA++ E LTP+G LA+LPVDV+IGKM++ G +F P+L+I+A LS +SPF + A+ L +D+ Sbjct: 516 PYPVPEIRRVALDALVLQMKSMSVGDPRTF--PFIEPPPPASVETAILYLQEQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRSAQSNLDCATARRPLESDQ 641 The following BLAST results are available for this feature:
BLAST of CB250339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 50
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Sequences
The
following sequences are available for this feature:
EST sequence >CB250339 ID=CB250339; Name=CB250339; organism=Citrus sinensis; type=EST; length=478bpback to top |