CB290516
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL5H_ARATH (RING-H2 finger protein ATL5H OS=Arabidopsis thaliana GN=ATL5H PE=2 SV=2) HSP 1 Score: 172.555 bits (436), Expect = 2.089e-42 Identity = 90/166 (54.22%), Postives = 105/166 (63.25%), Query Frame = 2 Query: 149 DPYS-NMKFSPXXXXXXXXXXXXXXXMGFFSIYIRHCSDS-SNSVIXXXXXXXXXXXXXXXXXLDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDLEAQNDAAV 640 DPY+ + SP MGFF++YIRHC+ + SV LD E I+TFPTFVYSEVKT K+GKGALECA+CLNEFEDDETLRL+PKCDHVFHP CI AWL+ H TCPVCR+NLA E TP+P + E DLEAQ +AV Sbjct: 33 DPYAYSGSLSPAMAVVVVVVIAALFFMGFFTVYIRHCTGAVDGSVTPAGGARRRVTNATVARGLDAETIETFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNLA----EQTPEPEVV--VETDLEAQQQSAV 192
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL3B_ARATH (RING-H2 finger protein ATL3B OS=Arabidopsis thaliana GN=ATL3B PE=1 SV=2) HSP 1 Score: 167.162 bits (422), Expect = 8.775e-41 Identity = 85/166 (51.20%), Postives = 103/166 (62.05%), Query Frame = 2 Query: 131 EPPGSVDPYSNMKFSPXXXXXXXXXXXXXXXMGFFSIYIRHCSDSSNS-VIXXXXXXXXXXXXXXXXXLDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDLEAQ 625 +P + PY+ + SP MGFFSIY RHCS ++ V LD V++TFPTF+YS+VKT K+GKG LECA+CLNEFEDDETLRL+PKCDHVFHP CIDAWLE+H TCPVCR+NLA + E + E G +E DLE Q Sbjct: 32 QPGPTNQPYNYGRLSPAMAVIVVILIAALFFMGFFSIYFRHCSGVPDAGVSPAGGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLAEQVAE--GESVEPGGTEPDLELQ 195
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1N_ARATH (RING-H2 finger protein ATL1N OS=Arabidopsis thaliana GN=ATL1N PE=2 SV=2) HSP 1 Score: 144.436 bits (363), Expect = 6.091e-34 Identity = 69/120 (57.50%), Postives = 82/120 (68.33%), Query Frame = 2 Query: 224 MGFFSIYIRHCSDSSNSVIXXXXXXXXXXXXXXXXX---LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGET 574 +GFFS+YIR C + + LD +I+TFPTF YS VKTL++GK ALEC+VCLNEFEDDETLRLIPKC HVFHP CIDAWL SHTTCP+CR++L PGE+ Sbjct: 77 LGFFSVYIRRCLERVMGMDYGNPNDAGNWLATNRQQARGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADLIPVPGES 196
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1C_ARATH (RING-H2 finger protein ATL1C OS=Arabidopsis thaliana GN=ATL1C PE=1 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.701e-32 Identity = 70/143 (48.95%), Postives = 82/143 (57.34%), Query Frame = 2 Query: 149 DPYSNMKFSPXXXXXXXXXXXXXXXMGFFSIYIRHCSDSSNSV-IXXXXXXXXXXXXXXXXXLDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGET 574 D FSP +G S+Y+R C + + LD VI+TFPTF YS VKTL++GK ALEC VCLNEFEDDETLRLIP+C HVFHP CIDAWL S TTCP+CR+NL PGE+ Sbjct: 28 DDEGRTSFSPTTAIIMIVLVSVFFALGCISVYMRRCLQHALGMDSGGGPGNWLNVRQTTEPGLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRANLVPVPGES 170
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL4C_ARATH (Putative RING-H2 finger protein ATL4C OS=Arabidopsis thaliana GN=ATL4C PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.028e-29 Identity = 54/83 (65.06%), Postives = 69/83 (83.13%), Query Frame = 2 Query: 332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTP 580 L++EVI++FPTF+YSEVK LK+GKG +ECA+CL+EFED ETLR +P C H FH CID WL S +TCPVCR+NL+ +PGE+ P Sbjct: 95 LEKEVIESFPTFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSWSTCPVCRANLSLKPGESYP 177
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL4B_ARATH (Putative RING-H2 finger protein ATL4B OS=Arabidopsis thaliana GN=ATL4B PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 4.994e-28 Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = 2 Query: 332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDLEAQND 631 L++E++++FP F+YSEVK LK+GKG +ECA+CL+EF D ETLR +P C H FH CID WL S +TCP CR+NL+ +PGE+ P P DLE N+ Sbjct: 95 LEKELVESFPIFLYSEVKGLKIGKGGVECAICLSEFVDKETLRWMPPCSHTFHANCIDVWLSSQSTCPACRANLSLKPGESYPYPI------TDLETGNE 188
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL4O_ARATH (RING-H2 finger protein ATL4O OS=Arabidopsis thaliana GN=ATL4O PE=2 SV=2) HSP 1 Score: 124.02 bits (310), Expect = 8.519e-28 Identity = 57/118 (48.31%), Postives = 74/118 (62.71%), Query Frame = 2 Query: 227 GFFSIYIRHCSDSSNSVIXXXXXXXXXXXXXXXXXLDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL---ASEPGE 571 G S+YIRHC+ S+ LD V+++FP F YS VK K+G LECA+CLNE ED ET+RL+P C+H+FH +CID WL SH TCPVCRSNL +++PG+ Sbjct: 60 GLLSVYIRHCARSNPDSSTRYFRNRANDGSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAKSNKPGD 177
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1H_ARATH (RING-H2 finger protein ATL1H OS=Arabidopsis thaliana GN=ATL1H PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.453e-27 Identity = 50/79 (63.29%), Postives = 66/79 (83.54%), Query Frame = 2 Query: 332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPG 568 L ++VI++FP+F+YS+VK LK+GKG +ECA+CLNEFED+ETLRL+P C H FH CID WL S +TCPVCR++L +PG Sbjct: 100 LGKDVINSFPSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASLPPKPG 178
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL4D_ARATH (Putative RING-H2 finger protein ATL4D OS=Arabidopsis thaliana GN=ATL4D PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.479e-27 Identity = 52/103 (50.49%), Postives = 74/103 (71.84%), Query Frame = 2 Query: 332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPS---ELGSSEVDLEAQND 631 +D++VI++FP F+YSEVK K+G G +ECA+CL EFED+E LR +P C H FH CID WL S +TCPVCR+NL+ + G++ P PS E G+++ ++ D Sbjct: 92 IDKDVIESFPAFLYSEVKAFKIGNGGVECAICLCEFEDEEPLRWMPPCSHTFHANCIDEWLSSRSTCPVCRANLSLKSGDSFPHPSMDVETGNAQRGVQESPD 194
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL2G_ARATH (RING-H2 finger protein ATL2G OS=Arabidopsis thaliana GN=ATL2G PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.479e-27 Identity = 50/74 (67.57%), Postives = 63/74 (85.14%), Query Frame = 2 Query: 332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 553 LD E I+TFPTF+YSEVK +++GKG +ECAVCL EFEDDETLRL+P C HVFH +C+D WL H+TCP+CR++L Sbjct: 107 LDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADL 180 The following BLAST results are available for this feature:
BLAST of CB290516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290516 ID=CB290516; Name=CB290516; organism=Citrus sinensis; type=EST; length=748bpback to top |