CB290521

Overview
NameCB290521
Unique NameCB290521
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6032 contig Csv1_Contig6032:1185..1996. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290521 vs. ExPASy Swiss-Prot
Match: CAF2P_ARATH (CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana GN=At1g23400 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.092e-38
Identity = 86/184 (46.74%), Postives = 115/184 (62.50%), Query Frame = -1
Query:  270 KELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGTPSDDPS---QGTIRSSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQSXXXXXXXXXXXXXXXXXXXXXXXXXXDVVPLGSLPVDHIAERLQRK 812
            KELVPCVLLSFDDEQILMWRG++WKS + + P   +  + +   + D S  PS++ +     T  SSPKMISLW+RA+ES+KA++L+E++LGPDDLLKKVEE EG S AAEH+Y A+VLS  DGA+    + +D S+                            V P+GSLPVD I  +L+ +
Sbjct:  385 KELVPCVLLSFDDEQILMWRGREWKSRFVDNPLIPSLSETNTTNELDPSDKPSEEQTVANPSTTISSPKMISLWQRALESSKAVILEELDLGPDDLLKKVEELEGTSLAAEHTYTAMVLSNTDGAAEDYVDEKDRSEE------YYSDIDDDFDDECSDDESLDPVGPVGSLPVDKIVRKLRER 562          
BLAST of CB290521 vs. ExPASy Swiss-Prot
Match: CAF2P_MAIZE (CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.344e-26
Identity = 79/193 (40.93%), Postives = 105/193 (54.40%), Query Frame = -1
Query:  279 KELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPV---DLDIAGDADGSGTPSDDPSQGTIRS--SPKMISLWKRAIESTKALVLDEI---NLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSM-AEYEDG------SQSXXXXXXXXXXXXXXXXXXXXXXXXXXDVVPLGSLPVDHIAERL 812
            ++LVPCVLLSFDDEQILM RGK+WKS Y +P +    V   +L +    + S   SD  +Q  IR    PKM  LWK A++S+ AL+LD+    NL PD LL  VEEF   SQA EHS+PAL+++  D ++ S+ AEY +       + +                            VPLGSLP+D + ERL
Sbjct:  416 RDLVPCVLLSFDDEQILMHRGKEWKSRYSKPLTLIPKVPKNNLAMTSVMNSSDEVSDANTQVAIREVLRPKMFKLWKSAVDSSLALLLDDAEANNLTPDSLLTLVEEFSVTSQAVEHSFPALLVTNGDASTDSLSAEYMNDEPETSVAGNEEGQLEQSPDLRDDEHFDVDMFERLESSVPLGSLPIDSMIERL 608          
BLAST of CB290521 vs. ExPASy Swiss-Prot
Match: CAF2P_ORYSJ (CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0323300 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.002e-24
Identity = 68/193 (35.23%), Postives = 103/193 (53.37%), Query Frame = -1
Query:  279 KELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPV---DLDIAGDADGSGTPSDDPSQGTIRS--SPKMISLWKRAIESTKALVLDEIN---LGPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSM-AEYEDGSQSXXXXXXXXXXXXXXXXXXXXXXXXXXDV------VPLGSLPVDHIAERL 812
            ++LVPCVLLSFD+EQILM+RGK+WKS YP+P +    +   ++ ++ D   S   +DD  +  +R    PKM  LW  AIES+ AL+LD+     L PD LL +VE+F   SQ  EHS+PA++++ ++     + AEY +                               +      VPLG+LP+D + ++L
Sbjct:  412 RDLVPCVLLSFDNEQILMFRGKEWKSRYPKPLTLIPKIRKNNVPMSSDESSSDEATDDDDRLAVREVLRPKMFELWTNAIESSVALMLDDAEVDALTPDSLLTRVEDFSVTSQVVEHSFPAVLVANDESNPDVLNAEYTEDEPETGTLEPQQHEFTESSDVAEDDHFEDDMLKRLESSVPLGALPIDAVVKQL 604          
The following BLAST results are available for this feature:
BLAST of CB290521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CAF2P_ARATH2.092e-3846.74CRS2-associated factor 2, chloroplastic OS=Arabido... [more]
CAF2P_MAIZE5.344e-2640.93CRS2-associated factor 2, chloroplastic OS=Zea may... [more]
CAF2P_ORYSJ5.002e-2435.23CRS2-associated factor 2, chloroplastic OS=Oryza s... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ca06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ca06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290521 ID=CB290521; Name=CB290521; organism=Citrus sinensis; type=EST; length=812bp
TTTTTTTTTTTTTTTTTCACTAAACATTATCGATTAGCCATGTGACATTA
ATAGATTACAACTGTACATCTTACGAGTAAAATGAAGGCGCAAGATTTAC
GTAGCTCCTGATGAAACCCACATCAACATGCACTAGCCTTCTGGAACAAG
AAGAATGGGACCCACCCCGTGACAACAATTTACATTTCTTTGTACCCATT
TATTTACTGGTACAAACAACATCACGAGCCAAAAGGAGTGCAAATGATCT
TTCTTTACTTTGAATTTCATTTCCGCTGGAGCCTCTCTGCTATATGATCA
ACAGGTAATGACCCTAATGGGACAACATCAGATGAGTCACTATCATAAAA
TTCATCGTCATCGTTGAAGTCATCCTCAGGATAAAATTCATCTTCGTCAT
AATTCTCACTTTGAGAACCATCTTCGTACTCTGCCATTGAACTACTGGCA
CCGTCTTCCCTTGACAAAACTAACGCTGGATAGGAGTGCTCTGCGGCCTG
TGAAATACCCTCAAATTCTTCAACCTTCTTCAAAAGATCATCAGGACCAA
GATTAATCTCATCCAGTACCAATGCCTTGGTTGATTCAATTGCGCGCTTC
CAGAGGGATATCATTTTAGGACTTGATCTAATGGTTCCTTGGCTAGGGTC
ATCACTAGGCGTCCCTGAACCATCTGCATCTCCAGCAATGTCAAGGTCAA
CAGGATTTGAAAATGAAGGAGGTTCTGGATACATTGATTTCCAATCTTTT
CCTCTCCACATCAATATCTGTTCATCGTCAAAAGATAATAGCACGCAGGG
AACCAATTCCTT
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