CB304495
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB304495 vs. ExPASy Swiss-Prot
Match: TPC2L_DICDI (Trafficking protein particle complex subunit 2-like protein OS=Dictyostelium discoideum GN=trappc2l PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 3.960e-32 Identity = 65/135 (48.15%), Postives = 98/135 (72.59%), Query Frame = -2 Query: 224 AVVGHQNNPLYIQSFTEA---DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDL-DVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIVKS 616 A+VG NNPL+IQ F+ + ++ LKLH+IVHCSLD+++++ + KK ++ +LGLLYPTE+YKVYGYLTNTK+KFI+V D D++D+D++ FF+R +I+ SNPF+ P K+ S+ F + V+ +V S Sbjct: 8 AIVGKGNNPLFIQDFSSSITDENKLKLHYIVHCSLDIIEDKPGSNKKLP---SDMYLGLLYPTEDYKVYGYLTNTKIKFIIVVLDTSDIKDSDLKLFFKRLQTLFINTTSNPFYKPNSKVESKKFLQEVTNLVPS 139
BLAST of CB304495 vs. ExPASy Swiss-Prot
Match: TPC2L_RAT (Trafficking protein particle complex subunit 2-like protein OS=Rattus norvegicus GN=Trappc2l PE=2 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 4.098e-29 Identity = 62/131 (47.33%), Postives = 95/131 (72.52%), Query Frame = -2 Query: 230 AVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIV 616 AV+ +N PLYI+S T ++ LK H++VH SLDVVDE+++ K+ E +LGLLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R+ FR+ H +Y D + NPF+ PG +I SR F V++++ Sbjct: 6 AVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLGLLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPGDRIQSRAFDTMVTSMM 135
BLAST of CB304495 vs. ExPASy Swiss-Prot
Match: TPC2L_XENTR (Trafficking protein particle complex subunit 2-like protein OS=Xenopus tropicalis GN=trappc2l PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 5.352e-29 Identity = 62/131 (47.33%), Postives = 93/131 (70.99%), Query Frame = -2 Query: 230 AVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIV 616 AV+ +N PLYI+S T ++ LK H+ VH SLDVVDE+++ K+ E +LGLLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R+ FR+ H +Y D + NPF+ PG I SR F V++++ Sbjct: 6 AVIAKENYPLYIRS-TPTENQLKFHYTVHTSLDVVDEKISAMGKAVMDQRELYLGLLYPTEDYKVYGYVTNSKVKFVMVVDSSNTSLRDNEIRSMFRKLHNSYTDVMCNPFYNPGDPIQSRAFDNTVTSMM 135
BLAST of CB304495 vs. ExPASy Swiss-Prot
Match: TPC2L_MOUSE (Trafficking protein particle complex subunit 2-like protein OS=Mus musculus GN=Trappc2l PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 5.352e-29 Identity = 62/131 (47.33%), Postives = 94/131 (71.76%), Query Frame = -2 Query: 230 AVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIV 616 AV+ +N PLYI+S T + LK H++VH SLDVVDE+++ K+ E +LGLLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R+ FR+ H +Y D + NPF+ PG +I SR F V++++ Sbjct: 6 AVIAKENYPLYIRS-TPTESELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLGLLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPGDRIQSRAFDTMVTSMM 135
BLAST of CB304495 vs. ExPASy Swiss-Prot
Match: TPC2L_BOVIN (Trafficking protein particle complex subunit 2-like protein OS=Bos taurus GN=TRAPPC2L PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.034e-28 Identity = 61/131 (46.56%), Postives = 94/131 (71.76%), Query Frame = -2 Query: 230 AVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIV 616 AV+ +N PLYI+S ++ LK H++VH SLDVVDE+++ K+ E +LGLLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R+ FR+ H +Y D + NPF+ PG +I SR F V++++ Sbjct: 6 AVIAKENYPLYIRSIP-TENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLGLLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPGDRIQSRAFDGMVTSMM 135
BLAST of CB304495 vs. ExPASy Swiss-Prot
Match: TPC2L_TAEGU (Trafficking protein particle complex subunit 2-like protein OS=Taeniopygia guttata GN=TRAPPC2L PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 4.531e-28 Identity = 61/131 (46.56%), Postives = 93/131 (70.99%), Query Frame = -2 Query: 230 AVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIV 616 AV+ +N PLYI+S ++ LK H+ VH SLDVVDE+++ K+ E +LGLLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R+ FR+ H +Y D + NPF+ PG +I SR F V++++ Sbjct: 6 AVIAKENYPLYIRS-VPTENELKFHYTVHTSLDVVDEKISAMGKALVDQRELYLGLLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDIMCNPFYNPGDRIHSRAFDTMVNSMM 135
BLAST of CB304495 vs. ExPASy Swiss-Prot
Match: TPC2L_HUMAN (Trafficking protein particle complex subunit 2-like protein OS=Homo sapiens GN=TRAPPC2L PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 4.531e-28 Identity = 62/132 (46.97%), Postives = 96/132 (72.73%), Query Frame = -2 Query: 230 AVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKI-TSRTFAERVSTIV 616 AV+ +N PLYI+S T ++ LK H++VH SLDVVDE+++ K+ E +LGLLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R+ FR+ H +Y D + NPF+ PG +I +SR F V++++ Sbjct: 6 AVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLGLLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPGDRIQSSRAFDNMVTSMM 136
BLAST of CB304495 vs. ExPASy Swiss-Prot
Match: TPC2L_SALSA (Trafficking protein particle complex subunit 2-like protein OS=Salmo salar GN=trappc2l PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 2.937e-27 Identity = 59/131 (45.04%), Postives = 90/131 (68.70%), Query Frame = -2 Query: 230 AVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIV 616 AV+ +N PLYI+S + LK H+ VH SLDVV+E+++ K+ E +LGLLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R+ FR+ H ++ D + NPF+ PG I S+ F VS ++ Sbjct: 6 AVIAKENYPLYIRS-VPVQNELKFHYTVHTSLDVVEEKISAVGKAMADQRELYLGLLYPTEDYKVYGYVTNSKVKFVIVVDSSNTSLRDNEIRSMFRKLHNSFTDVMCNPFYNPGDTIQSKAFDSMVSAMM 135
BLAST of CB304495 vs. ExPASy Swiss-Prot
Match: TPC2L_PONAB (Trafficking protein particle complex subunit 2-like protein OS=Pongo abelii GN=TRAPPC2L PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.046e-16 Identity = 48/129 (37.21%), Postives = 71/129 (55.04%), Query Frame = -2 Query: 230 AVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIV 616 AV+ +N PLYI+S T ++ LK H++VH SLDVVDE+++ K+ E +LGLLYPTE+YK+ FR+ H +Y D + NPF+ PG +I SR F V++++ Sbjct: 6 AVIAKENYPLYIRS-TPTENKLKFHYMVHTSLDVVDEKISAMGKALVDQRELYLGLLYPTEDYKM----------------------------FRKLHNSYTDVMCNPFYNPGDRIQSRAFDNMVTSMM 105 The following BLAST results are available for this feature:
BLAST of CB304495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB304495 ID=CB304495; Name=CB304495; organism=Citrus sinensis; type=EST; length=617bpback to top |