CB304735

Overview
NameCB304735
Unique NameCB304735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length499
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB304735 vs. ExPASy Swiss-Prot
Match: Y5175_ARATH (UPF0706 protein At5g01750 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.871e-11
Identity = 34/110 (30.91%), Postives = 67/110 (60.91%), Query Frame = -2 
Query:  139 WQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFLVDENSEDSASHFTMKGSPFQKSCTIYRGNS--IIAQTSLMYKLQQIYVRRNKFRLTIFPTSIEPAVIVALMVIFLD 462
            WQ F+G   ++++L++ V R+     +T+ +VFL   N ++    F +KGS  ++SC +Y G S  I+AQ    + +Q +++ ++ F +T++P +++ A I +L+VI  D
Sbjct:  102 WQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFL-GHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGKDNFSVTVYP-NVDYAFIASLVVILDD 209
The following BLAST results are available for this feature:
BLAST of CB304735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5175_ARATH1.871e-1130.91UPF0706 protein At5g01750 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_B03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_B03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304735 ID=CB304735; Name=CB304735; organism=Citrus sinensis; type=EST; length=499bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTAAATTTGAAATGGC
AAAATACAATACAAAAGCAGATACATTTCCTTTCTCGCTGGTGTGCATAT
GGAGACCAGGAGAAAGGAATGATGAAATAATTTTATTAGTCTAAGAAAAT
AACCATCAAAGCCACAATTACAGCAGGTTCAATAGACGTGGGAAAAATGG
TTAGTCGAAATTTATTTCTTCTCACATAAATCTGCTGAAGCTTGTACATG
AGACTAGTCTGAGCGATTATGGAATTGCCTCTATAGATGGTGCAAGATTT
TTGAAAAGGGCTGCCTTTCATTGTGAAATGAGAGGCTGAGTCTTCAGAGT
TTTCATCGACAAGGAATACCTCAAACTCAGTTCTTGTAAGTGTTTTCATT
GTCCTGTTCACTTTGAATATCAGCTCCTTCTCCTCACCATCATCTCCCTT
AAAACCTTGCCACAATCCCTTCTACAACCAGGAAAGAAATCACATTACT
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