CB304885

Overview
NameCB304885
Unique NameCB304885
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304885 vs. ExPASy Swiss-Prot
Match: RLA1_MAIZE (60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.825e-19
Identity = 43/61 (70.49%), Postives = 54/61 (88.52%), Query Frame = -3
Query:  410 MSASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 592
            M++ ELAC YA LIL DDGIAIT +KIA +VKAAN+ +ESYWP+LFAKLLEKRN++DLI++
Sbjct:    1 MASGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLILS 61          
BLAST of CB304885 vs. ExPASy Swiss-Prot
Match: RLA11_ARATH (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.085e-18
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = -3
Query:  410 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 589
            +  ELAC+YA +IL D+GIAIT DKIA LVKAA VSIESYWP LFAK+ EKRN+ DLIMN
Sbjct:    3 TVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMN 62          
BLAST of CB304885 vs. ExPASy Swiss-Prot
Match: RLA13_ARATH (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 9.100e-18
Identity = 43/60 (71.67%), Postives = 50/60 (83.33%), Query Frame = -3
Query:  410 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 589
            +  ELAC+YA +IL D+GIAIT DKIA LVKAA V+IESYWP LFAK+ EKRN+ DLIMN
Sbjct:    3 TVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMN 62          
BLAST of CB304885 vs. ExPASy Swiss-Prot
Match: RLA12_ARATH (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 9.100e-18
Identity = 43/60 (71.67%), Postives = 50/60 (83.33%), Query Frame = -3
Query:  410 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 589
            +  ELAC+YA +IL D+GIAIT+DKIA LVKAA V IESYWP LFAK+ EKRN+ DLIMN
Sbjct:    3 TVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMN 62          
BLAST of CB304885 vs. ExPASy Swiss-Prot
Match: RLA1_CHLRE (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.899e-17
Identity = 40/61 (65.57%), Postives = 47/61 (77.05%), Query Frame = -3
Query:  410 MSASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 592
            MS SELACTYA LILHDDG+ IT D I  + KAA V +E YWP+LFAKL  K+++DDLI N
Sbjct:    1 MSTSELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLITN 61          
BLAST of CB304885 vs. ExPASy Swiss-Prot
Match: RLA1_MOUSE (60S acidic ribosomal protein P1 OS=Mus musculus GN=Rplp1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.029e-13
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = -3
Query:  410 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 589
            S SELAC Y+ LILHDD + +T DKI  L+KAA VS+E +WP LFAK L   N+  LI N
Sbjct:    3 SVSELACIYSALILHDDEVTVTEDKINALIKAAGVSVEPFWPGLFAKALANVNIGSLICN 62          
BLAST of CB304885 vs. ExPASy Swiss-Prot
Match: RLA1_RAT (60S acidic ribosomal protein P1 OS=Rattus norvegicus GN=Rplp1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.749e-13
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = -3
Query:  410 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 589
            S SELAC Y+ LILHDD + +T DKI  L+KAA V++E +WP LFAK L   N+  LI N
Sbjct:    3 SVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICN 62          
BLAST of CB304885 vs. ExPASy Swiss-Prot
Match: RLA1_HUMAN (60S acidic ribosomal protein P1 OS=Homo sapiens GN=RPLP1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.749e-13
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = -3
Query:  410 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 589
            S SELAC Y+ LILHDD + +T DKI  L+KAA V++E +WP LFAK L   N+  LI N
Sbjct:    3 SVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICN 62          
BLAST of CB304885 vs. ExPASy Swiss-Prot
Match: RLA1_BOVIN (60S acidic ribosomal protein P1 OS=Bos taurus GN=RPLP1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.749e-13
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = -3
Query:  410 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 589
            S SELAC Y+ LILHDD + +T DKI  L+KAA V++E +WP LFAK L   N+  LI N
Sbjct:    3 SVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICN 62          
BLAST of CB304885 vs. ExPASy Swiss-Prot
Match: RLA1_DROME (60S acidic ribosomal protein P1 OS=Drosophila melanogaster GN=RpLP1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 8.814e-13
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = -3
Query:  410 SELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 583
            +ELAC YA LIL DD +A+T +KI  ++KAANV +E YWP LFAK LE  N+ DLI N
Sbjct:    5 AELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITN 62          
The following BLAST results are available for this feature:
BLAST of CB304885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RLA1_MAIZE4.825e-1970.4960S acidic ribosomal protein P1 OS=Zea mays GN=RPP... [more]
RLA11_ARATH4.085e-1873.3360S acidic ribosomal protein P1-1 OS=Arabidopsis t... [more]
RLA13_ARATH9.100e-1871.6760S acidic ribosomal protein P1-3 OS=Arabidopsis t... [more]
RLA12_ARATH9.100e-1871.6760S acidic ribosomal protein P1-2 OS=Arabidopsis t... [more]
RLA1_CHLRE5.899e-1765.5760S acidic ribosomal protein P1 OS=Chlamydomonas r... [more]
RLA1_MOUSE3.029e-1358.3360S acidic ribosomal protein P1 OS=Mus musculus GN... [more]
RLA1_RAT6.749e-1356.6760S acidic ribosomal protein P1 OS=Rattus norvegic... [more]
RLA1_HUMAN6.749e-1356.6760S acidic ribosomal protein P1 OS=Homo sapiens GN... [more]
RLA1_BOVIN6.749e-1356.6760S acidic ribosomal protein P1 OS=Bos taurus GN=R... [more]
RLA1_DROME8.814e-1360.3460S acidic ribosomal protein P1 OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_E08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_E08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304885 ID=CB304885; Name=CB304885; organism=Citrus sinensis; type=EST; length=603bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCAATCAATGACAAAGAAAA
TAAAAATTGATCCACAATACTTGTATACATCCAGAATCTCGAACACACAA
TGCAGAACCAAAGCAACTACTTAACACTTTCTGTTCACTCAGGGTTACCT
ATACTTCAAATCTTAACAAACAAAGATAGATACTACTAATAGGTCAAAAA
GACAATTAATCTTAAGAGTTGTAAACCAGCACCAGACCAAATCATTCTGA
AAGGAGCTCCTAATCAAACAAGCTGAAGCCCATATCTTCGTCACTTTCTT
CCTTGGGTTCTTCCTTCTTCTCCTCCGGGGGGGGAGCAGCAGCATCAGCC
CCAGCACCTCCAGCAGGAGCTGCAACAGCAACTGCACCACCGCCACCACC
AGACCCCACATTCATTATAAGATCATCTAAGTTCCGCTTCTCTAAGAGCT
TAGCAAACAAACTGGGCCAGTAAGATTCAATAGACACGTTGGCAGCCTTC
ACCAGTTGTGCAATCTTATCCGTAGTAATGGCGATGCCGTCATCGTGGAG
GATCAAACAGGCATAAGTACAAGCAAGCTCCGAAGCCGACATTGCTTTGA
CTC
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