CB611122

Overview
NameCB611122
Unique NameCB611122
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length381
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:396..776. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611122 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.087e-17
Identity = 42/49 (85.71%), Postives = 46/49 (93.88%), Query Frame = 1
Query:    4 ELKSAVTDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 150
            ELKS  TDWAVEAMPTFMFLKEGKIVDKVVGAKK+ELQQTIAKH+++ S
Sbjct:   68 ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKHISSTS 116          
BLAST of CB611122 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.202e-16
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 1
Query:    4 ELKSAVTDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 150
            ELK+   +WAVE+MPTFMFLKEGKI+DKVVGAKK+ELQQTIAKH+ATAS
Sbjct:   69 ELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKHMATAS 117          
BLAST of CB611122 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.791e-16
Identity = 38/46 (82.61%), Postives = 43/46 (93.48%), Query Frame = 1
Query:    4 ELKSAVTDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 141
            ELKS  +DWA++AMPTFMFLKEGKI+DKVVGAKK+ELQ TIAKHLA
Sbjct:   69 ELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114          
BLAST of CB611122 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.771e-13
Identity = 34/49 (69.39%), Postives = 42/49 (85.71%), Query Frame = 1
Query:    4 ELKSAVTDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 150
            ELK+   +W+VEAMPTF+F+K+GK VD+VVGAKKEELQQTI KH A A+
Sbjct:   75 ELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHAAPAT 123          
The following BLAST results are available for this feature:
BLAST of CB611122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TRXH2_TOBAC1.087e-1785.71Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH_RICCO1.202e-1681.63Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_ARATH7.791e-1682.61Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH1_TOBAC2.771e-1369.39Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
back to top
Properties
Property NameValue
Genbank descriptionALBEDO0001_IIaF_G03 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIaF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611122 ID=CB611122; Name=CB611122; organism=Citrus sinensis; type=EST; length=381bp
GGGGAACTGAAGAGTGCTGTCACTGACTGGGCAGTGGAGGCCATGCCAAC
TTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAA
AGAAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCTTCT
GCCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAG
ACCTCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGG
GATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGTTCTATGA
AGCTCATACTGTGGTCTTTACAATAATTTAATTTCATATTTGTTGTTGAA
CGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top