CF417456

Overview
NameCF417456
Unique NameCF417456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10018 contig Csv1_Contig10018:34..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417456 vs. ExPASy Swiss-Prot
Match: RR1_SPIOL (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.529e-69
Identity = 101/150 (67.33%), Postives = 123/150 (82.00%), Query Frame = 2
Query:   32 MATLAQQFTG-LRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREELKQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGISSGV 478
            MA+LAQQ  G LRCPP+S++ LS+  S      K     +   IVSAVA+SNA+TRER++LKQLFE+AYERCR APMEGVSFT+++FH+AL+KYDFNSE+G++VKGTVFCTD  GALVDITAKSSAYLP  EACI++IK+VEEAGI  GV
Sbjct:    1 MASLAQQLAGGLRCPPLSNSNLSKPFS-----PKHTLKPRFSPIVSAVAVSNAQTRERQKLKQLFEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDITAKSSAYLPLAEACIYRIKNVEEAGIIPGV 145          

HSP 2 Score: 83.5741 bits (205), Expect = 1.529e-69
Identity = 37/44 (84.09%), Postives = 43/44 (97.73%), Query Frame = 3
Query:  465 LVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSED 596
            ++PG++EEFVIIGENEADDSL+LSLR IQYELAWERCRQLQ+ED
Sbjct:  141 IIPGVREEFVIIGENEADDSLILSLRQIQYELAWERCRQLQAED 184          

HSP 3 Score: 26.5646 bits (57), Expect = 1.529e-69
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  652 VEGLRGFVPFS 684
            VEGLRGFVPFS
Sbjct:  203 VEGLRGFVPFS 213          
BLAST of CF417456 vs. ExPASy Swiss-Prot
Match: RS1A_SYNY3 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803) GN=rps1A PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.098e-20
Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = 2
Query:  266 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 457
            + FTLE+F + L+KYD++   G  V GTVF  ++RGAL+DI AK++AY+P QE  I+++   EE
Sbjct:   10 IGFTLEDFAALLDKYDYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVDDPEE 73          

HSP 2 Score: 48.1358 bits (113), Expect = 2.098e-20
Identity = 23/46 (50.00%), Postives = 29/46 (63.04%), Query Frame = 3
Query:  459 QVLVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSED 596
            +VL P    EF I+ +   D  L LS+R I+Y  AWER RQLQ+ED
Sbjct:   73 EVLQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAED 118          

HSP 3 Score: 24.2534 bits (51), Expect = 2.098e-20
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  643 LLEVEGLRGFVPFS 684
            L+ +EGLRGF+P S
Sbjct:  134 LVRIEGLRGFIPGS 147          
BLAST of CF417456 vs. ExPASy Swiss-Prot
Match: RS1_SYNP6 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4)

HSP 1 Score: 63.1586 bits (152), Expect = 2.171e-19
Identity = 30/68 (44.12%), Postives = 46/68 (67.65%), Query Frame = 2
Query:  254 PMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 457
            P   + FT E+F + L++YD++   G  V GTVF  + RGAL+DI AK++A+LP QE  I++++  EE
Sbjct:    7 PAVDIGFTHEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSINRVESPEE 74          

HSP 2 Score: 48.9062 bits (115), Expect = 2.171e-19
Identity = 23/46 (50.00%), Postives = 29/46 (63.04%), Query Frame = 3
Query:  459 QVLVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSED 596
            +VL P    EF I+ +   D  L LS+R I+Y  AWER RQLQ+ED
Sbjct:   74 EVLQPSEMREFFILSDENEDGQLTLSIRRIEYMRAWERVRQLQTED 119          

HSP 3 Score: 24.2534 bits (51), Expect = 2.171e-19
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  643 LLEVEGLRGFVPFS 684
            L+ +EGLRGF+P S
Sbjct:  135 LVRIEGLRGFIPGS 148          
The following BLAST results are available for this feature:
BLAST of CF417456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RR1_SPIOL1.529e-6967.3330S ribosomal protein S1, chloroplastic OS=Spinaci... [more]
RS1A_SYNY32.098e-2048.4430S ribosomal protein S1 homolog A OS=Synechocysti... [more]
RS1_SYNP62.171e-1944.1230S ribosomal protein S1 OS=Synechococcus sp. (str... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-386 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417456 ID=CF417456; Name=CF417456; organism=Citrus sinensis; type=EST; length=701bp
AAAAACTTGGCGAGCTGAAGGGAAAGCAAGAATGGCGACCTTGGCTCAAC
AGTTCACAGGACTAAGATGCCCACCAATCTCACACACACGCCTCTCAAGA
AGAAAATCGATTACCCAAATTCAACAAAAGCTTCTTAATAGCAGAAAAAA
TAAAACGATAGTGTCAGCAGTGGCAATATCAAATGCAGAGACTAGAGAGA
GGGAGGAGCTCAAGCAGCTCTTTGAAGAAGCTTACGAACGGTGTCGTACT
GCTCCCATGGAAGGCGTCTCTTTCACTCTCGAGGAGTTTCACTCTGCTCT
TGAGAAGTATGACTTCAATTCTGAATTAGGTACTAAAGTAAAGGGAACAG
TTTTTTGTACAGATAACCGTGGAGCACTAGTCGATATTACTGCAAAGTCA
TCTGCTTATTTGCCTACCCAAGAGGCATGCATTCACAAGATTAAACATGT
AGAAGAGGCAGGTATTAGTTCCGGGGTTGAAGGAGGAGTTTGTAATTATT
GGTGAAAATGAAGCTGATGATAGCTTGGTCTTGAGCCTACGGATGATCCA
GTACGAGCTTGCCTGGGAAAGATGTAGGCAGCTGCAATCTGAGGACGTTG
TTGTAAGGGGTAAGGTTGTTGGTGCAAACAAAGGTGGAGTGGTTGCTGGA
GGTGGAGGGCCTTCGTGGATTTGTCCCTTTCTCCCCAGATATCATCGAAA
T
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