CF417456
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417456 vs. ExPASy Swiss-Prot
Match: RR1_SPIOL (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1) HSP 1 Score: 195.667 bits (496), Expect = 1.529e-69 Identity = 101/150 (67.33%), Postives = 123/150 (82.00%), Query Frame = 2 Query: 32 MATLAQQFTG-LRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREELKQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGISSGV 478 MA+LAQQ G LRCPP+S++ LS+ S K + IVSAVA+SNA+TRER++LKQLFE+AYERCR APMEGVSFT+++FH+AL+KYDFNSE+G++VKGTVFCTD GALVDITAKSSAYLP EACI++IK+VEEAGI GV Sbjct: 1 MASLAQQLAGGLRCPPLSNSNLSKPFS-----PKHTLKPRFSPIVSAVAVSNAQTRERQKLKQLFEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDITAKSSAYLPLAEACIYRIKNVEEAGIIPGV 145 HSP 2 Score: 83.5741 bits (205), Expect = 1.529e-69 Identity = 37/44 (84.09%), Postives = 43/44 (97.73%), Query Frame = 3 Query: 465 LVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSED 596 ++PG++EEFVIIGENEADDSL+LSLR IQYELAWERCRQLQ+ED Sbjct: 141 IIPGVREEFVIIGENEADDSLILSLRQIQYELAWERCRQLQAED 184 HSP 3 Score: 26.5646 bits (57), Expect = 1.529e-69 Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 Query: 652 VEGLRGFVPFS 684 VEGLRGFVPFS Sbjct: 203 VEGLRGFVPFS 213
BLAST of CF417456 vs. ExPASy Swiss-Prot
Match: RS1A_SYNY3 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803) GN=rps1A PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.098e-20 Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = 2 Query: 266 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 457 + FTLE+F + L+KYD++ G V GTVF ++RGAL+DI AK++AY+P QE I+++ EE Sbjct: 10 IGFTLEDFAALLDKYDYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVDDPEE 73 HSP 2 Score: 48.1358 bits (113), Expect = 2.098e-20 Identity = 23/46 (50.00%), Postives = 29/46 (63.04%), Query Frame = 3 Query: 459 QVLVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSED 596 +VL P EF I+ + D L LS+R I+Y AWER RQLQ+ED Sbjct: 73 EVLQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAED 118 HSP 3 Score: 24.2534 bits (51), Expect = 2.098e-20 Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 1 Query: 643 LLEVEGLRGFVPFS 684 L+ +EGLRGF+P S Sbjct: 134 LVRIEGLRGFIPGS 147
BLAST of CF417456 vs. ExPASy Swiss-Prot
Match: RS1_SYNP6 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4) HSP 1 Score: 63.1586 bits (152), Expect = 2.171e-19 Identity = 30/68 (44.12%), Postives = 46/68 (67.65%), Query Frame = 2 Query: 254 PMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 457 P + FT E+F + L++YD++ G V GTVF + RGAL+DI AK++A+LP QE I++++ EE Sbjct: 7 PAVDIGFTHEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSINRVESPEE 74 HSP 2 Score: 48.9062 bits (115), Expect = 2.171e-19 Identity = 23/46 (50.00%), Postives = 29/46 (63.04%), Query Frame = 3 Query: 459 QVLVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSED 596 +VL P EF I+ + D L LS+R I+Y AWER RQLQ+ED Sbjct: 74 EVLQPSEMREFFILSDENEDGQLTLSIRRIEYMRAWERVRQLQTED 119 HSP 3 Score: 24.2534 bits (51), Expect = 2.171e-19 Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 1 Query: 643 LLEVEGLRGFVPFS 684 L+ +EGLRGF+P S Sbjct: 135 LVRIEGLRGFIPGS 148 The following BLAST results are available for this feature:
BLAST of CF417456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 3
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417456 ID=CF417456; Name=CF417456; organism=Citrus sinensis; type=EST; length=701bpback to top |