CF417459

Overview
NameCF417459
Unique NameCF417459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA2_METCA (Glycogen synthase 2 OS=Methylococcus capsulatus GN=glgA2 PE=3 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 5.178e-49
Identity = 96/201 (47.76%), Postives = 129/201 (64.18%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLN-RPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            PDIIHCHDWQTA V    +++Y P G+   RVCFT HNF++QG   A+ L + GLD  +     DR++DN     IN +KG IV++N VTTVSP YA E +    G GL  TL+ H  K+ G++NGID D WNP  D  + V +N + ++GK  +K+++R  L L  AD  KP+V  + RL PQKG+ LIRHA++ TLG G
Sbjct:  127 PDIIHCHDWQTALVPVYLYEIYQPMGMRHPRVCFTIHNFKHQGVTGAQVLHASGLDRPEYYFHYDRLRDNHNPHAINLMKGGIVYANFVTTVSPRYAMEAKDQGQGFGLEPTLHIHHMKYGGVVNGIDYDVWNPEIDPHIPVHFNVDTIEGKYADKKALRDRLLL--ADNEKPIVSFVGRLDPQKGIELIRHALFYTLGQG 325          

HSP 2 Score: 22.7126 bits (47), Expect = 5.178e-49
Identity = 11/23 (47.83%), Postives = 13/23 (56.52%), Query Frame = 2
Query:  611 FILLGSSPVPHIQREFEGIANHF 679
            F+LLGSSP   I   F G+   F
Sbjct:  328 FVLLGSSPDGAINGYFWGLKRQF 350          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_PARUW (Glycogen synthase OS=Protochlamydia amoebophila (strain UWE25) GN=glgA PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 3.308e-48
Identity = 94/201 (46.77%), Postives = 123/201 (61.19%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRK--------HLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 581
            PDIIH HDWQTA +APLY D+Y   G    ++ FT HN EYQG   A +L   GLD  +  +   MQDN     IN LKG IV+S+ VTTVSP+YA+EV T + G+GL +TL  +  KF GILNGID   WNP  D FL   Y+  ++    +++ ++ K           L  A+  +P++GCITRLVPQKG+ LI+H I
Sbjct:  130 PDIIHLHDWQTAVIAPLYKDMYQKLGYTKPKILFTIHNMEYQGKCAAHDLNYIGLDGNRYQQHSFMQDNLYPHLINLLKGGIVYSDFVTTVSPNYAKEVLTPKEGRGLEATLVEYQHKFKGILNGIDYSYWNPEIDRFLPAHYSLREMPKNKKDRNTVDKKGFIKKILREKLYLAEEHRPIIGCITRLVPQKGIDLIKHTI 330          

HSP 2 Score: 30.0314 bits (66), Expect = 3.308e-48
Identity = 14/33 (42.42%), Postives = 20/33 (60.61%), Query Frame = 2
Query:  581 ISNIGSWEDNFILLGSSPVPHIQREFEGIANHF 679
            I +I   +  FILLGSSP+P I  EF  + + +
Sbjct:  330 IRHIVEKKGQFILLGSSPIPSINDEFHRLKHQY 362          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA1_SYNJB (Glycogen synthase 1 OS=Synechococcus sp. GN=glgA1 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.002e-47
Identity = 98/198 (49.49%), Postives = 129/198 (65.15%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLN-RPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 593
            PDIIHCHDWQT  V  L +++Y   G+ + RVC+T HNF++QG    + L + GL+ +      DR++DN     +N +KG IVFSN VTTVSP++A EV+  + G GL  TL  H  KF G+LNGID D WNP  D F+ V+Y A  L+ KA+NK+++R  L L   D  KP+V  I RL  QKGVHL+ HAIYR+L
Sbjct:  130 PDIIHCHDWQTGLVPVLLFEIYKYHGMGNQRVCYTIHNFKHQGFGGPEILWATGLNREPYYFHYDRLRDNFNPFSLNFMKGGIVFSNFVTTVSPNHALEVQFGDYGYGLGHTLYLHRHKFRGVLNGIDYDIWNPEIDRFIPVRYTAQTLENKAKNKKALRDRLLLQDVD--KPIVAYIGRLDEQKGVHLVHHAIYRSL 325          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA1_NITOC (Glycogen synthase 1 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=glgA1 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.425e-46
Identity = 93/200 (46.50%), Postives = 121/200 (60.50%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            P+IIHCHDWQT  V  L ++ Y   G+   RVC+T HN  +QG      L   GLD      P+R+ D++    +N +KG IVFSN +TTVSP Y  E+R ++ G GL  TL+ HS+K  GILNG+D   WNP  D ++  +YN   L  K ENK ++R  L L   D  KP+VG I+RL PQKGV LIRHA++  L  G
Sbjct:  128 PEIIHCHDWQTGLVPVLLFEQYKYLGMTHPRVCYTLHNMRHQGVTGGHILQQVGLDPAAYMTPERLLDHTYPHGVNLMKGGIVFSNFITTVSPRYLDEIRYTDQGYGLQHTLHEHSQKLGGILNGVDYKVWNPDIDPYIAARYNLKTLDKKYENKTALRHRLWL--RDEYKPIVGVISRLDPQKGVELIRHALFYCLANG 325          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA1_SYNJA (Glycogen synthase 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=glgA1 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.548e-46
Identity = 96/198 (48.48%), Postives = 124/198 (62.63%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLN-RPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 593
            PDIIHCHDWQT  V  L +++Y   G+ + RVC+T HNF++QG    + L + GL+ +      DR++DN     +N +KG IVFSN VTTVSP++A E R      GL  TL  H  KF G+LNGID D WNP  D F+   Y A  L+ KA+NK+++R  L L   D  KP+V  I RL  QKGVHL+ HAIYR+L
Sbjct:  130 PDIIHCHDWQTGLVPVLLFEIYKYHGMENQRVCYTIHNFKHQGFGGPEILWATGLNREPYYFHYDRLRDNFNPFALNFMKGGIVFSNFVTTVSPTHALEARFGNYNYGLGHTLYLHQHKFRGVLNGIDYDIWNPEIDRFIPFHYTAQTLENKAKNKKALRDQLWLQDVD--KPIVAYIGRLDEQKGVHLVHHAIYRSL 325          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA1_ANAVT (Glycogen synthase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=glgA1 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.287e-45
Identity = 93/201 (46.27%), Postives = 130/201 (64.68%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLN-RPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            PDIIHCHDWQT  V  + +++Y   G+++ RVC+T HNF++QG    K L + GL+ +    + D++QD+     +N +KG IV+SN VTTVSP++A E + ++ G GL  TL  H  KF GILNGID D WNP  D ++   YN  D + K  NK+++R+ L L +AD  KP++  I RL  QKGVHL+ HAIY +L  G
Sbjct:  130 PDIIHCHDWQTGLVPVMLYEIYKYHGMDTQRVCYTIHNFKHQGIGGVKTLWATGLNREAYYFQNDKLQDDFNPFALNYMKGGIVYSNAVTTVSPNHALEAQYTDVGCGLGHTLYQHKDKFSGILNGIDYDFWNPEIDRYIPYNYNQEDFEQKLYNKKALRERLLLQAAD--KPIIAYIGRLDNQKGVHLVHHAIYHSLNKG 328          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA2_ANASP (Probable glycogen synthase 2 OS=Anabaena sp. (strain PCC 7120) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.859e-44
Identity = 89/201 (44.28%), Postives = 130/201 (64.68%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLN-RPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            PDIIHCHDWQT  +  + +++Y   G+++ RVC+T HNF++QG    K L + GL+ +    + D+++D+     +N +KG IV+SN VTTVSP++A E + ++ G GL  TL  H +KF G+LNGID D WNP  D  +   Y+ +D + K  NK+++R+ L L +AD  KP++  I RL  QKGVHL+ HAIY  L  G
Sbjct:  130 PDIIHCHDWQTGLIPVMLYEIYKYHGMDTQRVCYTIHNFKHQGIGGVKTLWATGLNREAYYFQDDKLRDDHNPFALNYMKGGIVYSNAVTTVSPNHALEAQYTDVGCGLGHTLYLHKEKFSGVLNGIDYDFWNPEIDRHIPDNYSQDDFEQKLYNKKALRERLLLQAAD--KPIIAYIGRLDNQKGVHLVHHAIYHALNKG 328          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA2_SYNY3 (Probable glycogen synthase 2 OS=Synechocystis sp. (strain PCC 6803) GN=glgA2 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.684e-43
Identity = 93/201 (46.27%), Postives = 124/201 (61.69%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRP-DRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLGAG 602
            PDIIHCHDWQT  V  L +++Y   G++  RVC+T HNF++QG A A  L + GL+        DR+QDN   + IN +KG IV+SN V TVSP +A E R S+   GL  TL  H +KF GILNG+D + WNP  D  L   ++      KA+NK+++R+ L L   D +KP++  I RL  QKGVHL+ H+IY  L  G
Sbjct:  130 PDIIHCHDWQTGLVPVLLYEIYRFHGMDHQRVCYTIHNFKHQGIAGANILHATGLNNDSYYFSYDRLQDNFNPNAINFMKGGIVYSNYVNTVSPHHAWEARFSDISCGLGHTLEIHQQKFGGILNGLDYEVWNPEIDPLLASNFSVKTFGDKAKNKQALRERL-LLETDDKKPMLCFIGRLDGQKGVHLVHHSIYYALSQG 329          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_CLONN (Glycogen synthase OS=Clostridium novyi (strain NT) GN=glgA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.570e-33
Identity = 81/202 (40.10%), Postives = 119/202 (58.91%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYV--PKGLNSARVCFTCHNFEYQGTAPAK---ELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 593
            PD++HC+DW TA   P+  D Y   PK LN+ +  +T HN +YQG    +   EL   G    +    D+ +    +D I+ +K  IV+++ +TTVSP+YA+E++T   G+GL+  L   SK   GILNGIDTD  NP+TD FL  +Y+ N+L+ KA NKE +++ L L   +   P++G + RL  QKG  LI+  I   L
Sbjct:  127 PDVLHCNDWHTAMTIPMLRDQYFNNPK-LNNIKTVYTIHNLKYQGRFGKEILWELLGFG---DEYFSEDKFK---YYDSISFMKAGIVYADAITTVSPTYAEEIKTEYYGEGLNGLLQSRSKDLYGILNGIDTDVNNPSTDMFLFDKYDVNNLEAKARNKEKLQEMLHLPK-NRDIPMIGIVARLEEQKGFELIKEVIEELL 320          
BLAST of CF417459 vs. ExPASy Swiss-Prot
Match: GLGA_ALKMQ (Glycogen synthase OS=Alkaliphilus metalliredigens (strain QYMF) GN=glgA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.250e-32
Identity = 74/198 (37.37%), Postives = 115/198 (58.08%), Query Frame = 3
Query:    3 PDIIHCHDWQTAFVAPLYWDLYVPKGL-NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 593
            PDIIHCHDWQTA ++ L    Y   G   + +  FT HN +YQG  P + L       QQ      ++    H  +N +KG + FS+ +TTVSP+YAQE++    G+GL   L+   K+  G+ NGID   +NP TD  L   +++ +L+ K +NK  +++ L L + DA+ P++G +TRLV QKG+ L+ + + + +
Sbjct:  126 PDIIHCHDWQTAMISYLLKTQYQHHGFYKNIKTVFTIHNLKYQGVFPQEVLGDLFNGSQQHFNEGGVE---YHGNVNYMKGGLNFSDYITTVSPTYAQEIQDPFFGEGLEGVLSRKKKQLQGVTNGIDDSVYNPQTDIHLFKNFSSENLRNKKDNKLGLQERLNL-AVDAKIPMIGMVTRLVEQKGLDLVANQLEKLM 319          
The following BLAST results are available for this feature:
BLAST of CF417459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
GLGA2_METCA5.178e-4947.76Glycogen synthase 2 OS=Methylococcus capsulatus GN... [more]
GLGA_PARUW3.308e-4846.77Glycogen synthase OS=Protochlamydia amoebophila (s... [more]
GLGA1_SYNJB4.002e-4749.49Glycogen synthase 1 OS=Synechococcus sp. GN=glgA1 ... [more]
GLGA1_NITOC4.425e-4646.50Glycogen synthase 1 OS=Nitrosococcus oceani (strai... [more]
GLGA1_SYNJA7.548e-4648.48Glycogen synthase 1 OS=Synechococcus sp. (strain J... [more]
GLGA1_ANAVT1.287e-4546.27Glycogen synthase 1 OS=Anabaena variabilis (strain... [more]
GLGA2_ANASP1.859e-4444.28Probable glycogen synthase 2 OS=Anabaena sp. (stra... [more]
GLGA2_SYNY32.684e-4346.27Probable glycogen synthase 2 OS=Synechocystis sp. ... [more]
GLGA_CLONN9.570e-3340.10Glycogen synthase OS=Clostridium novyi (strain NT)... [more]
GLGA_ALKMQ1.250e-3237.37Glycogen synthase OS=Alkaliphilus metalliredigens ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-389 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417459 ID=CF417459; Name=CF417459; organism=Citrus sinensis; type=EST; length=679bp
AACCGGACATCATTCACTGTCATGATTGGCAAACAGCTTTTGTTGCACCA
CTCTATTGGGATTTATATGTTCCAAAAGGATTAAATTCTGCTCGAGTTTG
TTTTACTTGCCACAACTTCGAGTACCAAGGGACTGCACCTGCAAAAGAAT
TGGCATCTTGTGGTCTTGATGTCCAGCAGCTAAATAGACCAGACAGAATG
CAGGACAACTCAGCCCATGACAGGATCAATCCTTTAAAAGGTGCAATTGT
GTTCTCTAATATTGTAACAACAGTGTCACCCTCCTATGCTCAAGAGGTAC
GGACATCTGAGGGTGGACAAGGCCTCCATTCAACACTTAATTTTCACTCC
AAAAAGTTTGTTGGCATTCTAAATGGAATCGACACTGATGCATGGAATCC
GGCCACCGATACTTTTCTCAAAGTCCAGTACAATGCTAATGACCTTCAAG
GAAAAGCAGAAAATAAAGAATCCATCAGAAAGCATCTAGGACTTTCTTCT
GCAGACGCTAGGAAGCCGTTGGTTGGATGCATAACAAGGTTGGTGCCACA
GAAAGGCGTGCATCTTATTAGACATGCAATATATCGAACATTGGGAGCTG
GGAGGACAATTTTATACTTCTTGGTTCAAGCCCAGTGCCGCATATTCAGA
GAGAATTCGAGGGCATTGCAAATCATTTT
back to top