CF417470

Overview
NameCF417470
Unique NameCF417470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12104 contig Csv1_Contig12104:95..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB2_TOBAC (Acetolactate synthase 2, chloroplastic OS=Nicotiana tabacum GN=ALS SURB PE=1 SV=1)

HSP 1 Score: 369.777 bits (948), Expect = 6.458e-102
Identity = 182/209 (87.08%), Postives = 198/209 (94.74%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGI 627
            VTRSITKHNYLV+DV+DIPR+VREAF LA SGRPGPVLIDVPKDIQQQL +P+W+QP++LPGYMSRLPK P+E+ LEQIVRLISESKKPVLYVGGGC  SSEELR+FVELTGIPVASTLMGLG+FP  DELSL MLGMHGTVYANYAVD SDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVS+CAD+KLAL+G+
Sbjct:  208 VTRSITKHNYLVMDVEDIPRVVREAFFLARSGRPGPVLIDVPKDIQQQLVIPDWDQPMRLPGYMSRLPKLPNEMLLEQIVRLISESKKPVLYVGGGCSQSSEELRRFVELTGIPVASTLMGLGAFPTGDELSLSMLGMHGTVYANYAVDSSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICADIKLALQGL 416          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB1_TOBAC (Acetolactate synthase 1, chloroplastic OS=Nicotiana tabacum GN=ALS SURA PE=1 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 1.879e-101
Identity = 180/209 (86.12%), Postives = 198/209 (94.74%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGI 627
            VTRSITKHNYLV+DV+DIPR+VREAF LA SGRPGP+LIDVPKDIQQQL +P+W+QP++LPGYMSRLPK P+E+ LEQIVRLISESKKPVLYVGGGC  SSE+LR+FVELTGIPVASTLMGLG+FP  DELSL MLGMHGTVYANYAVD SDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVS+CAD+KLAL+G+
Sbjct:  211 VTRSITKHNYLVMDVEDIPRVVREAFFLARSGRPGPILIDVPKDIQQQLVIPDWDQPMRLPGYMSRLPKLPNEMLLEQIVRLISESKKPVLYVGGGCSQSSEDLRRFVELTGIPVASTLMGLGAFPTGDELSLSMLGMHGTVYANYAVDSSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICADIKLALQGL 419          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB_ARATH (Acetolactate synthase, chloroplastic OS=Arabidopsis thaliana GN=CSR 1.2 PE=1 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 9.326e-101
Identity = 179/209 (85.65%), Postives = 195/209 (93.30%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGI 627
            VTRSITKHNYLV+DV+DIPRI+ EAF LATSGRPGPVL+DVPKDIQQQLA+PNW Q ++LPGYMSR+PK P + HLEQIVRLISESKKPVLYVGGGCLNSS+EL +FVELTGIPVASTLMGLGS+P  DELSL MLGMHGTVYANYAV+ SDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNK PHVSVC D+KLAL+G+
Sbjct:  214 VTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKDIQQQLAIPNWEQAMRLPGYMSRMPKPPEDSHLEQIVRLISESKKPVLYVGGGCLNSSDELGRFVELTGIPVASTLMGLGSYPCDDELSLHMLGMHGTVYANYAVEHSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGM 422          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB3_BRANA (Acetolactate synthase 3, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 362.073 bits (928), Expect = 1.347e-99
Identity = 180/209 (86.12%), Postives = 195/209 (93.30%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGI 627
            VTRSITKHNYLV+DVDDIPRIV+EAF LATSGRPGPVL+DVPKDIQQQLA+PNW+QP++LPGYMSRLP+ P    L QIVRLISESK+PVLYVGGG LNSSEEL +FVELTGIPVASTLMGLGS+P  DELSLQMLGMHGTVYANYAV+ SDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNK PHVSVC D+KLAL+G+
Sbjct:  196 VTRSITKHNYLVMDVDDIPRIVQEAFFLATSGRPGPVLVDVPKDIQQQLAIPNWDQPMRLPGYMSRLPQPPEVSQLGQIVRLISESKRPVLYVGGGSLNSSEELGRFVELTGIPVASTLMGLGSYPCNDELSLQMLGMHGTVYANYAVEHSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGM 404          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB1_BRANA (Acetolactate synthase 1, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 362.073 bits (928), Expect = 1.347e-99
Identity = 180/209 (86.12%), Postives = 195/209 (93.30%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGI 627
            VTRSITKHNYLV+DVDDIPRIV+EAF LATSGRPGPVL+DVPKDIQQQLA+PNW+QP++LPGYMSRLP+ P    L QIVRLISESK+PVLYVGGG LNSSEEL +FVELTGIPVASTLMGLGS+P  DELSLQMLGMHGTVYANYAV+ SDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNK PHVSVC D+KLAL+G+
Sbjct:  199 VTRSITKHNYLVMDVDDIPRIVQEAFFLATSGRPGPVLVDVPKDIQQQLAIPNWDQPMRLPGYMSRLPQPPEVSQLGQIVRLISESKRPVLYVGGGSLNSSEELGRFVELTGIPVASTLMGLGSYPCNDELSLQMLGMHGTVYANYAVEHSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGM 407          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB2_BRANA (Acetolactate synthase 2, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 9.033e-96
Identity = 173/210 (82.38%), Postives = 191/210 (90.95%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTD-ELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGI 627
            VTR+ITKHNYLV++VDDIPRIVREAF LATS RPGPVLIDVPKD+QQQ A+PNW QP++LP YMS +PK P   HLEQI+RL+SESK+PVLYVGGGCLNSSEELR+FVELTGIPVAST MGLGS+P  D E SLQMLGMHGTVYANYAV+ SDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDS EIGKNK PHVSVC D++LAL+G+
Sbjct:  190 VTRTITKHNYLVMEVDDIPRIVREAFFLATSVRPGPVLIDVPKDVQQQFAIPNWEQPMRLPLYMSTMPKPPKVSHLEQILRLVSESKRPVLYVGGGCLNSSEELRRFVELTGIPVASTFMGLGSYPCDDEEFSLQMLGMHGTVYANYAVEYSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSTEIGKNKTPHVSVCCDVQLALQGM 399          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB1_MAIZE (Acetolactate synthase 1, chloroplastic OS=Zea mays GN=ALS1 PE=3 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 1.304e-94
Identity = 164/209 (78.47%), Postives = 192/209 (91.87%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGI 627
            VTRSITKHNYLVLDVDDIPR+V+EAF LA+SGRPGPVL+D+PKDIQQQ+AVP W++P+ LPGY++RLPK P+   LEQ++RL+ ES++PVLYVGGGC  S EELR+FVELTGIPV +TLMGLG+FP  D LSL+MLGMHGTVYANYAVDK+DLLLA GVRFDDRVTGK+EAFASRAKIVH+DID AEIGKNKQPHVS+CAD+KLAL+G+
Sbjct:  182 VTRSITKHNYLVLDVDDIPRVVQEAFFLASSGRPGPVLVDIPKDIQQQMAVPVWDKPMSLPGYIARLPKPPATELLEQVLRLVGESRRPVLYVGGGCAASGEELRRFVELTGIPVTTTLMGLGNFPSDDPLSLRMLGMHGTVYANYAVDKADLLLALGVRFDDRVTGKIEAFASRAKIVHVDIDPAEIGKNKQPHVSICADVKLALQGM 390          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB2_MAIZE (Acetolactate synthase 2, chloroplastic OS=Zea mays GN=ALS2 PE=3 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 3.795e-94
Identity = 164/209 (78.47%), Postives = 190/209 (90.91%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGI 627
            VTRSITKHNYLVLDVDDIPR+V+EAF LA+SGRPGPVL+D+PKDIQQQ+AVP W+ P+ LPGY++RLPK P+   LEQ++RL+ ES++PVLYVGGGC  S EEL +FVELTGIPV +TLMGLG+FP  D LSL+MLGMHGTVYANYAVDK+DLLLAFGVRFDDRVTGK+EAFA RAKIVHIDID AEIGKNKQPHVS+CAD+KLAL+G+
Sbjct:  182 VTRSITKHNYLVLDVDDIPRVVQEAFFLASSGRPGPVLVDIPKDIQQQMAVPAWDTPMSLPGYIARLPKPPATEFLEQVLRLVGESRRPVLYVGGGCAASGEELCRFVELTGIPVTTTLMGLGNFPSDDPLSLRMLGMHGTVYANYAVDKADLLLAFGVRFDDRVTGKIEAFAGRAKIVHIDIDPAEIGKNKQPHVSICADVKLALQGM 390          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB1_ORYSJ (Acetolactate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=ALS1 PE=2 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.221e-92
Identity = 161/209 (77.03%), Postives = 190/209 (90.91%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGI 627
            VTRSITKHNYLVLDV+DIPR+++EAF LA+SGRPGPVL+D+PKDIQQQ+AVP W+  + LPGY++RLPK P+   LEQ++RL+ ES++P+LYVGGGC  S +ELR FVELTGIPV +TLMGLG+FP  D LSL+MLGMHGTVYANYAVDK+DLLLAFGVRFDDRVTGK+EAFASRAKIVHIDID AEIGKNKQPHVS+CAD+KLAL+G+
Sbjct:  188 VTRSITKHNYLVLDVEDIPRVIQEAFFLASSGRPGPVLVDIPKDIQQQMAVPVWDTSMNLPGYIARLPKPPATELLEQVLRLVGESRRPILYVGGGCSASGDELRWFVELTGIPVTTTLMGLGNFPSDDPLSLRMLGMHGTVYANYAVDKADLLLAFGVRFDDRVTGKIEAFASRAKIVHIDIDPAEIGKNKQPHVSICADVKLALQGL 396          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB2_ORYSJ (Probable acetolactate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=ALS2 PE=2 SV=2)

HSP 1 Score: 332.028 bits (850), Expect = 1.492e-90
Identity = 152/208 (73.08%), Postives = 189/208 (90.87%), Query Frame = 1
Query:    4 TRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGI 627
            TRSITKHNYL+LDVDDIPR++ EAF LA++GRPGPVL+D+PKDIQQQ+AVP+W+ P++LPGY+SRLPK P+   L++++RL+ ++++PVLYVGGGC  S  ELR+FVELTGIPV +TLMG+G+FP  D LSL+MLGMHGTVYANYAVD +DLLLA GVRFDDRVTGK+EAFASRAKIVH+DID +E+GKNKQPHVS+CAD+KLAL+G+
Sbjct:  203 TRSITKHNYLILDVDDIPRVINEAFFLASTGRPGPVLVDIPKDIQQQMAVPSWDAPMRLPGYISRLPKPPAANLLDEVIRLVGDAERPVLYVGGGCSASGYELRRFVELTGIPVTTTLMGIGNFPSDDPLSLRMLGMHGTVYANYAVDNADLLLALGVRFDDRVTGKVEAFASRAKIVHVDIDPSELGKNKQPHVSICADVKLALQGM 410          
The following BLAST results are available for this feature:
BLAST of CF417470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
ILVB2_TOBAC6.458e-10287.08Acetolactate synthase 2, chloroplastic OS=Nicotian... [more]
ILVB1_TOBAC1.879e-10186.12Acetolactate synthase 1, chloroplastic OS=Nicotian... [more]
ILVB_ARATH9.326e-10185.65Acetolactate synthase, chloroplastic OS=Arabidopsi... [more]
ILVB3_BRANA1.347e-9986.12Acetolactate synthase 3, chloroplastic OS=Brassica... [more]
ILVB1_BRANA1.347e-9986.12Acetolactate synthase 1, chloroplastic OS=Brassica... [more]
ILVB2_BRANA9.033e-9682.38Acetolactate synthase 2, chloroplastic OS=Brassica... [more]
ILVB1_MAIZE1.304e-9478.47Acetolactate synthase 1, chloroplastic OS=Zea mays... [more]
ILVB2_MAIZE3.795e-9478.47Acetolactate synthase 2, chloroplastic OS=Zea mays... [more]
ILVB1_ORYSJ1.221e-9277.03Acetolactate synthase 1, chloroplastic OS=Oryza sa... [more]
ILVB2_ORYSJ1.492e-9073.08Probable acetolactate synthase 2, chloroplastic OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-400 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417470 ID=CF417470; Name=CF417470; organism=Citrus sinensis; type=EST; length=629bp
GTAACGCGCTCCATTACAAAACATAATTATCTTGTACTTGATGTTGACGA
CATTCCTAGGATTGTTAGAGAAGCTTTCCTTTTAGCAACATCTGGGCGGC
CAGGCCCTGTGTTGATCGATGTACCGAAAGACATACAGCAGCAGCTGGCG
GTTCCCAATTGGAACCAGCCGATTAAATTGCCCGGTTACATGTCTAGGTT
GCCTAAAGAACCCAGTGAGATTCATTTGGAACAGATTGTTAGGTTAATAT
CAGAATCAAAGAAACCGGTGTTGTATGTTGGTGGCGGGTGTTTGAATTCT
AGTGAGGAGTTAAGGAAGTTTGTTGAGCTTACGGGGATACCGGTAGCAAG
TACTTTGATGGGTTTGGGGTCGTTTCCTGGTACGGATGAGTTATCGTTGC
AAATGCTAGGAATGCATGGGACTGTGTATGCAAATTATGCAGTCGATAAG
AGTGATTTGTTGCTTGCTTTTGGGGTTAGGTTTGATGATCGTGTGACTGG
GAAGCTTGAGGCTTTTGCTAGCCGAGCTAAGATTGTTCATATTGATATTG
ATTCTGCGGAGATTGGGAAGAATAAGCAGCCTCATGTGTCGGTCTGTGCA
GATTTGAAGTTGGCTTTGAAGGGAATTAT
back to top