CF417474

Overview
NameCF417474
Unique NameCF417474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417474_ssr339 microsatellite CF417474_ssr339:339..350. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9362 contig Csv1_Contig9362:41..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417474 vs. ExPASy Swiss-Prot
Match: RH7_ARATH (DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis thaliana GN=RH7 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 4.482e-28
Identity = 61/72 (84.72%), Postives = 67/72 (93.06%), Query Frame = 3 
Query:  399 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 614
            E ++PNAVS+FRIS PLREKLK+ GIE+LFPIQA TFDMVLDG+DLVGRARTGQGKTLAFVLPILESL NGP
Sbjct:   91 EVDNPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGP 162
[Close]
BLAST of CF417474 vs. ExPASy Swiss-Prot
Match: RH7_ORYSJ (DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica GN=Os09g0520700 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.302e-24
Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 3 
Query:  411 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNG 611
            PNA++ FRIS  LREKLKSKGI++LFPIQA TFD+VLDG DLVGRARTGQGKTLAFVLPILESL NG
Sbjct:  114 PNALANFRISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILESLVNG 180
[Close]
BLAST of CF417474 vs. ExPASy Swiss-Prot
Match: RH7_SPIOL (DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.143e-23
Identity = 54/71 (76.06%), Postives = 63/71 (88.73%), Query Frame = 3 
Query:  399 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNG 611
            E+E PN++S FRIS PL++ L SKGI++LFPIQAMTFD V+DG DLVGRARTGQGKTLAFVLPI+ESL NG
Sbjct:  102 EAEDPNSLSNFRISKPLKDVLISKGIKALFPIQAMTFDNVIDGCDLVGRARTGQGKTLAFVLPIVESLVNG 172
The following BLAST results are available for this feature:
BLAST of CF417474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RH7_ARATH4.482e-2884.72DEAD-box ATP-dependent RNA helicase 7 OS=Arabidops... [more]
RH7_ORYSJ2.302e-2483.58DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sat... [more]
RH7_SPIOL1.143e-2376.06DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-404 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417474 ID=CF417474; Name=CF417474; organism=Citrus sinensis; type=EST; length=616bp
CTCATTGCCACATCAAATTTGTAGCAGGAGACGCCCTCTGCTGTTTCTTT
GTATCTCATTTTAATTTTTGTAACTTAACATAACCATTCATGCCTTCGAT
CGCTTTGTTTGACGGAAAAGAAGTGAAAGACGAGAAGAAGATGAATAAGA
AAATGGCTCTCAAGGACTTCGAAGAAACGGAGGCGGCGTTAACTGAGAAG
AGTTCGGATAAGAAGAAGAGCAAGAAGAAGGAGAGTAGTAAGAAGCGGAA
GGAATCGGAGATTGAGGAGGAGGAAGAGAGAAGCGAAACGAGCTCGGAGT
TAGGCGAGCCGGTGAATTTGAAATCGGAGAAGGAGAAAAAGAAGAAGAAG
AAAGCGAAAGTTGAGCCTGAGGCTGGAGTGGAAGAGCAGGAGAGGGGTGA
AAGCGAACATCCGAATGCGGTTTCGAGGTTTAGAATATCGGTGCCATTAA
GGGAAAAGCTCAAGTCCAAGGGGATTGAGTCTTTGTTTCCTATTCAAGCT
ATGACTTTTGATATGGTTCTTGATGGCTCTGATTTAGTCGGACGTGCACG
GACCGGTCAGGGTAAAACTTTAGCCTTTGTGTTGCCAATTTTAGAGTCTC
TAACGAATGGGCCAAC
back to top