CF417696

Overview
NameCF417696
Unique NameCF417696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13307 contig Csv1_Contig13307:876..1568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417696 vs. ExPASy Swiss-Prot
Match: P2R3C_MOUSE (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Mus musculus GN=Ppp2r3c PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 5.313e-26
Identity = 79/231 (34.20%), Postives = 115/231 (49.78%), Query Frame = 2
Query:    2 EEGSISHRVQRLAKYRFLKKQSXXXXXXXXXXXMWVCLRENCVIDDATGAEKM-NYEDFCHIASVCTEQIGPKCRRFFSPSNFMKF-EKDESGRIAILPFYLYVMRTVSLTQARIDMSELDEDSDGFLQPHEMEAYIRGLIPSLAQLRDMPTGFIQMYCRIAAHKFFFFCDPHRRGKACIKKVLLSNCXXXXXXXXXXXXXXVTDTEQAENWFSLTSAQRVCDMFIALDKD 688
            E+  +  +++  ++  FL+++S           +W  L ++  I    G E M NYE+F  +     E+ GPKC++FF+   F K    D  GRI+I+ F+ YVMR V L Q RI +S  D    G+L+  ++E YI  LIP+L QL  +   F   Y   A  KFFFF DP R GK  I+ +L  +               ++   Q  NWFS  SA RV   ++ LDKD
Sbjct:   66 EDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKH-QIPPMIGEEAMINYENFLKVG----EKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLYDVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKIQDILACS---FLDDLLELRDEELSKESQETNWFSAPSALRVYGQYLNLDKD 288          
BLAST of CF417696 vs. ExPASy Swiss-Prot
Match: P2R3C_RAT (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Rattus norvegicus GN=Ppp2r3c PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.939e-26
Identity = 78/231 (33.77%), Postives = 115/231 (49.78%), Query Frame = 2
Query:    2 EEGSISHRVQRLAKYRFLKKQSXXXXXXXXXXXMWVCLRENCVIDDATGAEKM-NYEDFCHIASVCTEQIGPKCRRFFSPSNFMKF-EKDESGRIAILPFYLYVMRTVSLTQARIDMSELDEDSDGFLQPHEMEAYIRGLIPSLAQLRDMPTGFIQMYCRIAAHKFFFFCDPHRRGKACIKKVLLSNCXXXXXXXXXXXXXXVTDTEQAENWFSLTSAQRVCDMFIALDKD 688
            E+  +  +++  ++  FL+++S           +W  L ++  I    G E M NYE+F  +     E+ GPKC++FF+   F K    D  GR++I+ F+ YVMR V L Q RI +S  D    G+L+  ++E YI  LIP+L QL  +   F   Y   A  KFFFF DP R GK  I+ +L  +               ++   Q  NWFS  SA RV   ++ LDKD
Sbjct:   66 EDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKH-QIPPMIGEEAMINYENFLKVG----EKAGPKCKQFFTAKVFAKLLHTDSYGRVSIMQFFNYVMRKVWLHQTRIGLSLYDVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKIQDILACS---FLDDLLELRDEELSKESQETNWFSAPSALRVYGQYLNLDKD 288          
BLAST of CF417696 vs. ExPASy Swiss-Prot
Match: P2R3C_BOVIN (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Bos taurus GN=PPP2R3C PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.019e-25
Identity = 75/230 (32.61%), Postives = 112/230 (48.70%), Query Frame = 2
Query:    2 EEGSISHRVQRLAKYRFLKKQSXXXXXXXXXXXMWVCLRENCVIDDATGAEKMNYEDFCHIASVCTEQIGPKCRRFFSPSNFMKF-EKDESGRIAILPFYLYVMRTVSLTQARIDMSELDEDSDGFLQPHEMEAYIRGLIPSLAQLRDMPTGFIQMYCRIAAHKFFFFCDPHRRGKACIKKVLLSNCXXXXXXXXXXXXXXVTDTEQAENWFSLTSAQRVCDMFIALDKD 688
            E+  +  +++  ++  FL+++S           +W  L ++           +NYE+F  +     E+ GPKC++FF+   F K    D  GRI+I+ F+ YVMR V L Q RI +S  D    G+L+  ++E YI  LIP+L QL  +   F   Y   A  KFFFF DP R GK  I+ +L  +               ++   Q  NWFS  SA RV   ++ LDKD
Sbjct:   66 EDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKHQTPPMIGEEAMINYENFLKVG----EKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLYDVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKIQDILACS---FLDDLLELRDEELSKESQETNWFSAPSALRVYGQYLNLDKD 288          
BLAST of CF417696 vs. ExPASy Swiss-Prot
Match: P2R3C_HUMAN (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Homo sapiens GN=PPP2R3C PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.709e-24
Identity = 74/230 (32.17%), Postives = 111/230 (48.26%), Query Frame = 2
Query:    2 EEGSISHRVQRLAKYRFLKKQSXXXXXXXXXXXMWVCLRENCVIDDATGAEKMNYEDFCHIASVCTEQIGPKCRRFFSPSNFMKF-EKDESGRIAILPFYLYVMRTVSLTQARIDMSELDEDSDGFLQPHEMEAYIRGLIPSLAQLRDMPTGFIQMYCRIAAHKFFFFCDPHRRGKACIKKVLLSNCXXXXXXXXXXXXXXVTDTEQAENWFSLTSAQRVCDMFIALDKD 688
            E+  +  +++  ++  FL+++S           +W  L ++           +NYE+F  +     E+ G KC++FF+   F K    D  GRI+I+ F+ YVMR V L Q RI +S  D    G+L+  ++E YI  LIP+L QL  +   F   Y   A  KFFFF DP R GK  I+ +L  +               ++   Q  NWFS  SA RV   ++ LDKD
Sbjct:   66 EDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKHQTPPMIGEEAMINYENFLKVG----EKAGAKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLYDVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKIQDILACS---FLDDLLELRDEELSKESQETNWFSAPSALRVYGQYLNLDKD 288          
BLAST of CF417696 vs. ExPASy Swiss-Prot
Match: P2R3C_DANRE (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Danio rerio GN=ppp2r3c PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.483e-24
Identity = 76/231 (32.90%), Postives = 112/231 (48.48%), Query Frame = 2
Query:    2 EEGSISHRVQRLAKYRFLKKQSXXXXXXXXXXXMWVCLRENCVIDDATGAEKM-NYEDFCHIASVCTEQIGPKCRRFFSPSNFMKF-EKDESGRIAILPFYLYVMRTVSLTQARIDMSELDEDSDGFLQPHEMEAYIRGLIPSLAQLRDMPTGFIQMYCRIAAHKFFFFCDPHRRGKACIKKVLLSNCXXXXXXXXXXXXXXVTDTEQAENWFSLTSAQRVCDMFIALDKD 688
            E+  +  +++  ++  FL+++S           +W  L ++ V    TG E M +YE F  +     E+ G KC+ FF+   + K    D  GRI+I+ F+ YVMR V L Q RI +S  D    G+L+  ++E YI  LIP+L QL  +   F   Y   A  KFFFF DP   GK  I+ +L  +               ++   Q  NWFS  SA RV   ++ LDKD
Sbjct:   69 EDEVLMQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKHQV-PPTTGDEAMISYESFLKVG----EKAGTKCKLFFTARVYAKLLHNDPYGRISIMQFFNYVMRKVWLHQTRIGLSLYDVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLHTGKIKIQDILACS---FLDDLLELRDEELSKESQESNWFSAPSALRVYGQYLNLDKD 291          
BLAST of CF417696 vs. ExPASy Swiss-Prot
Match: P2R3C_XENTR (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Xenopus tropicalis GN=ppp2r3c PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.468e-23
Identity = 76/231 (32.90%), Postives = 111/231 (48.05%), Query Frame = 2
Query:    2 EEGSISHRVQRLAKYRFLKKQSXXXXXXXXXXXMWVCLRENCVIDDATGAEKM-NYEDFCHIASVCTEQIGPKCRRFFSPSNFMKF-EKDESGRIAILPFYLYVMRTVSLTQARIDMSELDEDSDGFLQPHEMEAYIRGLIPSLAQLRDMPTGFIQMYCRIAAHKFFFFCDPHRRGKACIKKVLLSNCXXXXXXXXXXXXXXVTDTEQAENWFSLTSAQRVCDMFIALDKD 688
            E+  +  +++  ++  FL+++S           +W  L ++       G E M NY +F  +     E+ G KC+ FF+   F K    D  GRI+I+ F+ YVMR V L Q RI +S  D    G+L+  ++E YI  LIP+L QL  +   F   Y   A  KFFFF DP R GK  I+ +L  +               ++   Q  NWFS  SA RV   ++ LDKD
Sbjct:   61 EDEVLQQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKH-QSPPLIGEEAMINYTNFQTVG----EKAGEKCKTFFTSKVFSKLIPNDPYGRISIMQFFNYVMRKVWLHQTRIGLSLYDVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKIQDILACS---FLDDLLELRDEDLSKESQESNWFSAPSALRVYGQYLNLDKD 283          
The following BLAST results are available for this feature:
BLAST of CF417696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
P2R3C_MOUSE5.313e-2634.20Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_RAT6.939e-2633.77Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_BOVIN2.019e-2532.61Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_HUMAN1.709e-2432.17Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_DANRE8.483e-2432.90Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_XENTR2.468e-2332.90Serine/threonine-protein phosphatase 2A regulatory... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-626 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417696 ID=CF417696; Name=CF417696; organism=Citrus sinensis; type=EST; length=693bp
TGAAGAAGGGTCCATTAGTCACAGGGTCCAGAGACTTGCAAAATATCGGT
TTTTAAAGAAGCAATCAGATCTTTTACTAAATGCTGATGATCTGGATGCA
ATGTGGGTTTGCTTGAGAGAAAACTGTGTTATTGATGATGCCACTGGTGC
AGAAAAGATGAATTATGAAGATTTTTGCCACATTGCGTCAGTATGTACTG
AGCAAATAGGCCCTAAGTGTAGACGTTTCTTCAGCCCGTCAAATTTTATG
AAGTTTGAGAAAGATGAGTCGGGGAGAATCGCCATTTTGCCGTTCTATCT
ATATGTGATGCGTACGGTTTCACTTACACAAGCCAGAATTGATATGAGTG
AGCTTGATGAAGATTCTGATGGTTTCCTTCAACCTCATGAAATGGAGGCT
TATATACGTGGTCTGATTCCTAGTCTGGCACAACTACGTGATATGCCAAC
AGGCTTTATTCAAATGTATTGTCGGATAGCTGCACACAAATTCTTCTTCT
TTTGTGATCCCCACAGACGAGGAAAAGCCTGCATAAAGAAAGTTCTGCTT
AGTAATTGTCTCCAGGAACTAATGGAACTCCATCAGGAAAGTGAGGAAGA
AGTTACTGACACTGAACAAGCTGAAAATTGGTTTTCTTTGACATCTGCAC
AACGCGTATGCGACATGTTTATTGCCCTTGATAAGGATGCCAA
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