CF417827

Overview
NameCF417827
Unique NameCF417827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417827 vs. ExPASy Swiss-Prot
Match: Y4466_ARATH (ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.675e-39
Identity = 45/79 (56.96%), Postives = 55/79 (69.62%), Query Frame = 2
Query:  404 RPPRREEVNLNVCPPGNVGPATGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHN 640
            RPP       +   P + G   G +KR RTKFT EQK+KML FAER+GWR+Q+ DDVA+ QFC E GV+R VLK+WMHN
Sbjct:  136 RPPAASGDEEDTSNPSSSG---GTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHN 211          

HSP 2 Score: 86.6557 bits (213), Expect = 5.675e-39
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 1
Query:  154 INYKECMKNHAASIGGHANDGCCEFMPRAD----DSLTCAACGCHRNFHRRE 297
            I Y+EC+KNHA +IGGHA DGCCEFMP  +    D+L CAACGCHRNFHR+E
Sbjct:   47 IRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKE 98          
BLAST of CF417827 vs. ExPASy Swiss-Prot
Match: Y5541_ARATH (ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana GN=At5g65410 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.104e-17
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 2
Query:  407 PPRREEVNLNVCPPGNVGPATGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHN 640
            PP + E + +     +     G  KR RTKFT EQK++ML  AERIGWR+QRQDD  + +FC E GV R VLKVW+HN
Sbjct:  168 PPPQRERSEDPMETSSAEAGGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHN 245          

HSP 2 Score: 74.3294 bits (181), Expect = 5.898e-13
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 1
Query:  160 YKECMKNHAASIGGHANDGCCEFMPR----ADDSLTCAACGCHRNFHRREV 300
            ++EC+KN A +IGGHA DGC EFMP       D+L CAACGCHRNFHR+E+
Sbjct:   75 FRECLKNQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFHRKEL 125          
The following BLAST results are available for this feature:
BLAST of CF417827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y4466_ARATH5.675e-3956.96ZF-HD homeobox protein At4g24660 OS=Arabidopsis th... [more]
Y5541_ARATH5.104e-1752.56ZF-HD homeobox protein At5g65410 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-757 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417827 ID=CF417827; Name=CF417827; organism=Citrus sinensis; type=EST; length=642bp
TATCCTTCCACTTCACATAAATACAGTTACTATACCTTGTAATCCCCCTT
CATTAAACAAATCAAACAAGGTGATCAATTACTTTGAATAATGGATCTCA
GTTTGGTTCCTTACAAACACCAACGTCCACATCCACAACAAGAACCAAAC
ATAATCAACTACAAAGAATGCATGAAGAACCACGCAGCCTCCATCGGCGG
CCACGCCAACGACGGCTGCTGCGAGTTCATGCCACGTGCTGATGACTCCC
TCACGTGCGCTGCATGCGGCTGTCACCGTAACTTCCACAGAAGAGAAGTC
CGCGGCCAGCTGCTCCCGCAGCCAAAGCGCTTGTTGCTTTTCAAGGACCC
TACCAAGCTAGTGGGAGCCGTTGATCGTTATGACGAATATGATAGACGGT
CGGAGACCCCCGAGGAGGGAGGAGGTAAATCTGAATGTGTGTCCTCCGGG
AAATGTGGGTCCNGCGACGGGGAAGAGCAAGAGGCAGAGGACTAAGTTCA
CGCAAGAGCAAAAGGATAAGATGCTTGAGTTTGCCGAGAGAATAGGGTGG
CGAATGCAAAGGCAGGATGACGTGGCACTCAACCAGTTTTGTAATGAAGT
GGGTGTTAAAAGACACGTGCTTAAAGTTTGGATGCATAATAA
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