CF417847

Overview
NameCF417847
Unique NameCF417847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: TRXX_ARATH (Thioredoxin-X, chloroplastic OS=Arabidopsis thaliana GN=ATHX PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 9.274e-45
Identity = 103/191 (53.93%), Postives = 130/191 (68.06%), Query Frame = 2
Query:  104 SXFSNSTLLFKQQPLVAPVRTVT-VTHRQQNIITSAXXXXXXPSKNQLLFGSRTNLSLKSYNXTLPRLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLXLKEYIDTLLDSISVA 673
            S  S+ST+L +   L  PVR+ +  T      ++S        +++ L   S    + KS +         +RCG   GI EI ESEF +TVL+S +PVLVEFVA WCGPC+L+ PA+E L+QEYGD+LT+VKIDHDANP+LI E+KVYGLP  ILFK+G+EVP SRREGAITK  LKEYID LL+SISVA
Sbjct:    3 SIVSSSTILMRSY-LTPPVRSCSPATSVSVKPLSSVQVTSVAANRHLLSLSSGARRTRKSSSSV-------IRCG---GIKEIGESEFSSTVLESAQPVLVEFVATWCGPCKLIYPAMEALSQEYGDKLTIVKIDHDANPKLIAEFKVYGLPHFILFKDGKEVPGSRREGAITKAKLKEYIDGLLNSISVA 182          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: THIO2_ANASP (Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN=trxB PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 1.103e-21
Identity = 52/111 (46.85%), Postives = 78/111 (70.27%), Query Frame = 2
Query:  329 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLXLKEYIDTLLDS 661
            S G+  IT++EF + VLK+E+PVLV F A+WCGPC+L++P +   A  Y DRL VVK++ D NP  +++YKV G+P L L K G+++ +S  EG I+K  L  ++DT L++
Sbjct:    2 SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVK-GEQILDS-TEGVISKDKLLSFLDTHLNN 110          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: THIO_THIFE (Thioredoxin OS=Thiobacillus ferrooxidans GN=trxA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.192e-21
Identity = 48/109 (44.04%), Postives = 71/109 (65.14%), Query Frame = 2
Query:  329 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLXLKEYIDTLL 655
            S  I  +++  F   VLKS +PVLV+F A WCGPC+++AP +E +A EY DRL V K + D NP    +Y + G+PTL+LFK G+   E+ + GA++K  L  ++D+ L
Sbjct:    2 SDAILYVSDDSFETDVLKSSKPVLVDFWAEWCGPCKMIAPILEEIADEYADRLRVAKFNIDENPNTPPQYAIRGIPTLLLFKAGK--LEATKVGALSKAQLTAFLDSQL 108          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: THIO2_SYNY3 (Thioredoxin-like protein slr1139 OS=Synechocystis sp. (strain PCC 6803) GN=slr1139 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.081e-20
Identity = 51/109 (46.79%), Postives = 71/109 (65.14%), Query Frame = 2
Query:  338 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLXLKEYIDTLLDSI 664
            + EIT++EF        +PVLV F A+WCGPCRL+APA++ +A++YGD+L V+K++ D NP  + + KV G+P L LFKN + V     EGAI K  L E +   LD I
Sbjct:    3 LLEITDAEFEQETQGQTKPVLVYFWASWCGPCRLMAPAIQAIAKDYGDKLKVLKLEVDPNPAAVAQCKVEGVPALRLFKNNELV--MTHEGAIAKPKLLELLKEELDFI 109          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: THIO_SHIFL (Thioredoxin-1 OS=Shigella flexneri GN=trxA PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 46/109 (42.20%), Postives = 72/109 (66.06%), Query Frame = 2
Query:  329 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLXLKEYIDTLL 655
            S  I  +T+  F   VLK++  +LV+F A WCGPC+++AP ++ +A EY  +LTV K++ D NP    +Y + G+PTL+LFKNG+    + + GA++K  LKE++D  L
Sbjct:    2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGALSKGQLKEFLDANL 108          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: THIO_SALTY (Thioredoxin-1 OS=Salmonella typhimurium GN=trxA PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 46/109 (42.20%), Postives = 72/109 (66.06%), Query Frame = 2
Query:  329 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLXLKEYIDTLL 655
            S  I  +T+  F   VLK++  +LV+F A WCGPC+++AP ++ +A EY  +LTV K++ D NP    +Y + G+PTL+LFKNG+    + + GA++K  LKE++D  L
Sbjct:    2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGALSKGQLKEFLDANL 108          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: THIO_SALTI (Thioredoxin-1 OS=Salmonella typhi GN=trxA PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 46/109 (42.20%), Postives = 72/109 (66.06%), Query Frame = 2
Query:  329 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLXLKEYIDTLL 655
            S  I  +T+  F   VLK++  +LV+F A WCGPC+++AP ++ +A EY  +LTV K++ D NP    +Y + G+PTL+LFKNG+    + + GA++K  LKE++D  L
Sbjct:    2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGALSKGQLKEFLDANL 108          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: THIO_ECOLI (Thioredoxin-1 OS=Escherichia coli (strain K12) GN=trxA PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 46/109 (42.20%), Postives = 72/109 (66.06%), Query Frame = 2
Query:  329 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLXLKEYIDTLL 655
            S  I  +T+  F   VLK++  +LV+F A WCGPC+++AP ++ +A EY  +LTV K++ D NP    +Y + G+PTL+LFKNG+    + + GA++K  LKE++D  L
Sbjct:    2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGALSKGQLKEFLDANL 108          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: THIO_ECOL6 (Thioredoxin-1 OS=Escherichia coli O6 GN=trxA PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 46/109 (42.20%), Postives = 72/109 (66.06%), Query Frame = 2
Query:  329 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLXLKEYIDTLL 655
            S  I  +T+  F   VLK++  +LV+F A WCGPC+++AP ++ +A EY  +LTV K++ D NP    +Y + G+PTL+LFKNG+    + + GA++K  LKE++D  L
Sbjct:    2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGALSKGQLKEFLDANL 108          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: THIO_ECO57 (Thioredoxin-1 OS=Escherichia coli O157:H7 GN=trxA PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 46/109 (42.20%), Postives = 72/109 (66.06%), Query Frame = 2
Query:  329 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLXLKEYIDTLL 655
            S  I  +T+  F   VLK++  +LV+F A WCGPC+++AP ++ +A EY  +LTV K++ D NP    +Y + G+PTL+LFKNG+    + + GA++K  LKE++D  L
Sbjct:    2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGALSKGQLKEFLDANL 108          
The following BLAST results are available for this feature:
BLAST of CF417847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
TRXX_ARATH9.274e-4553.93Thioredoxin-X, chloroplastic OS=Arabidopsis thalia... [more]
THIO2_ANASP1.103e-2146.85Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO_THIFE4.192e-2144.04Thioredoxin OS=Thiobacillus ferrooxidans GN=trxA P... [more]
THIO2_SYNY32.081e-2046.79Thioredoxin-like protein slr1139 OS=Synechocystis ... [more]
THIO_SHIFL3.549e-2042.20Thioredoxin-1 OS=Shigella flexneri GN=trxA PE=3 SV... [more]
THIO_SALTY3.549e-2042.20Thioredoxin-1 OS=Salmonella typhimurium GN=trxA PE... [more]
THIO_SALTI3.549e-2042.20Thioredoxin-1 OS=Salmonella typhi GN=trxA PE=3 SV=... [more]
THIO_ECOLI3.549e-2042.20Thioredoxin-1 OS=Escherichia coli (strain K12) GN=... [more]
THIO_ECOL63.549e-2042.20Thioredoxin-1 OS=Escherichia coli O6 GN=trxA PE=3 ... [more]
THIO_ECO573.549e-2042.20Thioredoxin-1 OS=Escherichia coli O157:H7 GN=trxA ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-777 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417847 ID=CF417847; Name=CF417847; organism=Citrus sinensis; type=EST; length=720bp
GTTAGTCCTGCGGCTGCTCCGTTTTTGTATCACACAAAACTGAAAACAAT
TCAAAAAGAAAAGAAAATGCTCTAAAAATNTTTAAGCGCTTGCAAAATGG
ACATCCNTCTTCTCCAACTCCACTTTATTGTTCAAACAGCAACCACTGGT
TGCTCCTGTTCGTACAGTTACTGTGACCCACAGGCAACAGAACATCATCA
CCAGCGCTACAACAACAACAACAACGCCGTCAAAGAATCAGCTATTGTTC
GGGTCTCGAACGAACCTCTCACTCAAGTCTTATAATCNTACGCTTCCCAG
GTTGGCAATACGCGTACGCTGCGGTGCGAGCAGTGGCATAACGGAGATTA
CCGAAAGTGAGTTCCCAAACACGGTCTTGAAATCTGAGCGTCCGGTTCTT
GTCGAGTTCGTGGCCAATTGGTGCGGTCCTTGCCGCTTGGTTGCTCCCGC
CGTCGAATGGCTCGCCCAGGAATACGGAGACAGATTGACCGTCGTAAAGA
TTGATCATGACGCAAACCCACAACTAATAGAGGAATACAAAGTTTATGGA
TTGCCGACCTTGATTCTCTTCAAGAATGGACAGGAAGTTCCNGAAAGCAG
GAGGGAAGGTGCNATTACGAAGTTGANGCTTAAAGAGTATATTGATACTC
TTTTAGATTCNATCTCAGTGGCTTAGCCCTCTTTTGAACATGCTCAGCAA
ATTATGCTCATTCTTCCAAC
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