CF504094

Overview
NameCF504094
Unique NameCF504094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length365
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3221 contig Csv1_Contig3221:165..529. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL261_ARATH (60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 9.997e-40
Identity = 83/121 (68.60%), Postives = 90/121 (74.38%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXTKFTPEDI 363
            A SS RR++MS+PLSTDLRQKYNVRSMP+RKDDEVQ+VRGTYKGREGKVVQVYRRKWVIHIERITREKVNG+TVNVGI PSKVVIT                           TKFT ED+
Sbjct:   21 ASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGRAAADKEKGTKFTSEDV 141          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL262_ARATH (60S ribosomal protein L26-2 OS=Arabidopsis thaliana GN=RPL26B PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.222e-37
Identity = 79/121 (65.29%), Postives = 89/121 (73.55%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXTKFTPEDI 363
            APSSVRR+LMS+PLS DLR K+NVRSMP+RKDDEVQVVRGT+KGREGKV+QVYRRKWVIHIERITREKVNGSTVNVG+N S V+IT                           TKF+ ED+
Sbjct:   21 APSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRGTFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLERKANGRAAADKEKGTKFSAEDV 141          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL26_BRARA (60S ribosomal protein L26 OS=Brassica rapa GN=RPL26 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.676e-35
Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            A SS RR+ MS+PLSTDLRQKYNVRSMP+RKDDE Q+VRGTYKGREGK+ QVYRRK VIHIER+TREKVNG+TVNVG+ P+KVVIT
Sbjct:   21 ASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRGTYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVIT 106          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL26L_HUMAN (60S ribosomal protein L26-like 1 OS=Homo sapiens GN=RPL26L1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.232e-31
Identity = 67/87 (77.01%), Postives = 80/87 (91.95%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            APS VRR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   21 APSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL26_MOUSE (60S ribosomal protein L26 OS=Mus musculus GN=Rpl26 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.915e-31
Identity = 66/87 (75.86%), Postives = 80/87 (91.95%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   21 APSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL26_MACFA (60S ribosomal protein L26 OS=Macaca fascicularis GN=RPL26 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.915e-31
Identity = 66/87 (75.86%), Postives = 80/87 (91.95%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   21 APSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL26_HUMAN (60S ribosomal protein L26 OS=Homo sapiens GN=RPL26 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.915e-31
Identity = 66/87 (75.86%), Postives = 80/87 (91.95%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   21 APSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL26_CHICK (60S ribosomal protein L26 (Fragment) OS=Gallus gallus GN=RPL26 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.915e-31
Identity = 66/87 (75.86%), Postives = 80/87 (91.95%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    4 APSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 90          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL26_BOVIN (60S ribosomal protein L26 OS=Bos taurus GN=RPL26 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.915e-31
Identity = 66/87 (75.86%), Postives = 80/87 (91.95%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   21 APSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CF504094 vs. ExPASy Swiss-Prot
Match: RL26_RAT (60S ribosomal protein L26 OS=Rattus norvegicus GN=Rpl26 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.808e-31
Identity = 66/87 (75.86%), Postives = 79/87 (90.80%), Query Frame = 1
Query:    1 APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 258
            APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI PSKVVIT
Sbjct:   21 APSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIRPSKVVIT 107          
The following BLAST results are available for this feature:
BLAST of CF504094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
RL261_ARATH9.997e-4068.6060S ribosomal protein L26-1 OS=Arabidopsis thalian... [more]
RL262_ARATH1.222e-3765.2960S ribosomal protein L26-2 OS=Arabidopsis thalian... [more]
RL26_BRARA5.676e-3581.4060S ribosomal protein L26 OS=Brassica rapa GN=RPL2... [more]
RL26L_HUMAN2.232e-3177.0160S ribosomal protein L26-like 1 OS=Homo sapiens G... [more]
RL26_MOUSE2.915e-3175.8660S ribosomal protein L26 OS=Mus musculus GN=Rpl26... [more]
RL26_MACFA2.915e-3175.8660S ribosomal protein L26 OS=Macaca fascicularis G... [more]
RL26_HUMAN2.915e-3175.8660S ribosomal protein L26 OS=Homo sapiens GN=RPL26... [more]
RL26_CHICK2.915e-3175.8660S ribosomal protein L26 (Fragment) OS=Gallus gal... [more]
RL26_BOVIN2.915e-3175.8660S ribosomal protein L26 OS=Bos taurus GN=RPL26 P... [more]
RL26_RAT3.808e-3175.8660S ribosomal protein L26 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-582 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504094 ID=CF504094; Name=CF504094; organism=Citrus sinensis; type=EST; length=365bp
GCCCCTTCCAGCGTGCGCCGCATCTTGATGAGCGCGCCGCTGTCCACTGA
CCTCCGTCAGAAGTACAACGTAAGGTCGATGCCTGTGCGCAAGGACGACG
AGGTCCAGGTTGTCCGTGGGACCTACAAGGGGCGCGAGGGCAAAGTCGTT
CAAGTGTATCGCCGGAAGTGGGTCATTCACATCGAGCGCATCACTCGCGA
GAAGGTTAATGGATCCACTGTGAATGTGGGAATCAACCCATCAAAGGTCG
TGATCACCAAGCTCCGTCTGGACAAGGACAGGAAGTCTTTGCTCGATCGC
AAGGCCAAGGGACGTGCCGCCGCTGACAAGGAGAAGGGTACCAAGTTCAC
CCCAGAGGATATTAT
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