CF504144
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504144 vs. ExPASy Swiss-Prot
Match: U2AFB_ARATH (Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=2 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 1.484e-35 Identity = 66/71 (92.96%), Postives = 68/71 (95.77%), Query Frame = 3 Query: 3 TEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDF 215 TEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITPGVDPQGQ LDP KIQDHFEDF Sbjct: 11 TEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDPQGQPLDPSKIQDHFEDF 81
BLAST of CF504144 vs. ExPASy Swiss-Prot
Match: U2AFA_ARATH (Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 7.363e-35 Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 3 Query: 3 TEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDF 215 TEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITPGVD QGQ LDPRKIQ+HFEDF Sbjct: 11 TEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPLDPRKIQEHFEDF 81
BLAST of CF504144 vs. ExPASy Swiss-Prot
Match: U2AFB_ORYSJ (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica GN=U2AF35B PE=2 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 1.176e-32 Identity = 58/71 (81.69%), Postives = 67/71 (94.37%), Query Frame = 3 Query: 3 TEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDF 215 TEKDRVNCPFYFKIGACRHGDRCSRLH +P++SPT++L+NMYQRPDMITPGVD QGQ +DP K+Q+HFEDF Sbjct: 11 TEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITPGVDAQGQPIDPEKMQEHFEDF 81
BLAST of CF504144 vs. ExPASy Swiss-Prot
Match: U2AFA_ORYSJ (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A PE=2 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 1.300e-31 Identity = 60/71 (84.51%), Postives = 63/71 (88.73%), Query Frame = 3 Query: 3 TEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDF 215 TEKDRVNCPFYFKIGACRHGDRCSRLH KPS+SPTLLLSNMY RPDMITPG+D QG +DP KIQ FEDF Sbjct: 11 TEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITPGIDAQGNPIDPEKIQADFEDF 81
BLAST of CF504144 vs. ExPASy Swiss-Prot
Match: U2AF1_MOUSE (Splicing factor U2AF 35 kDa subunit OS=Mus musculus GN=U2af1 PE=2 SV=4) HSP 1 Score: 88.5817 bits (218), Expect = 1.068e-17 Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 3 Query: 3 TEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDF 215 TEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T+ L N+Y+ P + D A+ ++Q+H+++F Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEF 81
BLAST of CF504144 vs. ExPASy Swiss-Prot
Match: U2AF1_HUMAN (Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3) HSP 1 Score: 88.5817 bits (218), Expect = 1.068e-17 Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 3 Query: 3 TEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDF 215 TEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T+ L N+Y+ P + D A+ ++Q+H+++F Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEF 81
BLAST of CF504144 vs. ExPASy Swiss-Prot
Match: U2AF1_BOVIN (Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.068e-17 Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 3 Query: 3 TEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDF 215 TEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T+ L N+Y+ P + D A+ ++Q+H+++F Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEF 81
BLAST of CF504144 vs. ExPASy Swiss-Prot
Match: U2AF4_RAT (Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 1.822e-17 Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 3 Query: 3 TEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDF 215 TEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L N+Y+ P D + ++Q+H+++F Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNF 81
BLAST of CF504144 vs. ExPASy Swiss-Prot
Match: U2AF4_MOUSE (Splicing factor U2AF 26 kDa subunit OS=Mus musculus GN=U2af1l4 PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 1.822e-17 Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 3 Query: 3 TEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDF 215 TEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L N+Y+ P D + ++Q+H+++F Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNF 81
BLAST of CF504144 vs. ExPASy Swiss-Prot
Match: U2AF4_BOVIN (Splicing factor U2AF 26 kDa subunit OS=Bos taurus GN=U2AF1L4 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 1.822e-17 Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 3 Query: 3 TEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDF 215 TEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L N+Y+ P D + ++Q+H+++F Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNF 81 The following BLAST results are available for this feature:
BLAST of CF504144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504144 ID=CF504144; Name=CF504144; organism=Citrus sinensis; type=EST; length=215bpback to top |