CF504304

Overview
NameCF504304
Unique NameCF504304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10481 contig Csv1_Contig10481:64..536. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504304 vs. ExPASy Swiss-Prot
Match: NDK2_ARATH (Nucleoside diphosphate kinase II, chloroplastic OS=Arabidopsis thaliana GN=NDPK2 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 2.409e-23
Identity = 64/112 (57.14%), Postives = 72/112 (64.29%), Query Frame = 3
Query:   75 SSNKLTLRTTSHLAAFHSQSRLFVKPPSCRRRRTVARNSNETGIFLPHLVASMEQVEETYIMVKPDGVQRGLVGEIISRFEXXXXXXXXXXXXQCPKDLAEARCWEYLYSSF 410
            S  ++  RT   LAAF  Q RLF +  S  RRR  A +S E+GIFLPHLVASME VEETYIMVKPDG+QRGLVGEIISRFE            QCPK+LAE    +    SF
Sbjct:   31 SPARVNFRTA--LAAFRPQFRLFSRN-SASRRRLRASSSAESGIFLPHLVASMEDVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSF 139          
BLAST of CF504304 vs. ExPASy Swiss-Prot
Match: NDK2_SPIOL (Nucleoside diphosphate kinase 2, chloroplastic OS=Spinacia oleracea GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 7.749e-22
Identity = 63/136 (46.32%), Postives = 73/136 (53.68%), Query Frame = 3
Query:   15 GVSSSPTLVGKISCSRRLSYSSNKLTLRTTSH----LAAFHSQSRLFVKPPSCRRRRTVARNSNETGIFLPHLVASMEQVEETYIMVKPDGVQRGLVGEIISRFEXXXXXXXXXXXXQCPKDLAEARCWEYLYSSF 410
            G+SS    +  +  S   +     L  R  +H    LAAFHSQS LF             + S +  IFLPHLVASMEQVEETYIM+KPDGVQRGLVGEIISRFE             CPK+LAE    +    SF
Sbjct:    6 GLSSPCNCISSLPHSSSTTTRHQNLLFRRNNHHQQKLAAFHSQSHLFSTKCPLISHSLPRKKSFKPHIFLPHLVASMEQVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLIGLKMYPCPKELAEEHYKDLKAKSF 141          
BLAST of CF504304 vs. ExPASy Swiss-Prot
Match: NDK2_TOBAC (Nucleoside diphosphate kinase 2, chloroplastic OS=Nicotiana tabacum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.022e-21
Identity = 59/118 (50.00%), Postives = 71/118 (60.17%), Query Frame = 3
Query:   24 SSPTLVGKISCSRRLSYSSNKLTLRTTSHLAAFHSQSRLFVKPPSCRRRRTVARNSNETGIFLPHLVASMEQVEETYIMVKPDGVQRGLVGEIISRFEXXXXXXXXXXXXQCPKDLAE 377
            SSPT   ++SC+       N +  +   HLAAF     LF    S   R   ++ ++ T IFLPHLVASME+VEETYIM+KPDGVQRGLVGEIISRFE             CPK+LAE
Sbjct:   19 SSPT--SRLSCAPSCKLILNPI--KKNHHLAAFQPAVHLFASNQS---RSHASKRNHTTRIFLPHLVASMEEVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLTGLKLFHCPKELAE 129          
BLAST of CF504304 vs. ExPASy Swiss-Prot
Match: NDK2_PEA (Nucleoside diphosphate kinase 2, chloroplastic OS=Pisum sativum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.252e-20
Identity = 58/125 (46.40%), Postives = 72/125 (57.60%), Query Frame = 3
Query:    9 ALGVSSSPTLVGKISCSRRLSYSSNKLTLRTTSHLAAFHSQSRLFV--KPPSCRRRRTVARNSNETGIFLPHLVASMEQVEETYIMVKPDGVQRGLVGEIISRFEXXXXXXXXXXXXQCPKDLAE 377
            A+ V S   L    S     +  +    LRTT +L+AF S+S LF      S   +    R+S E+GIFLP L+ S+EQV++ YIMVKPDGVQRGLVGEIISRFE            QC K+LAE
Sbjct:    3 AMAVFSGSNLFATSSLLLTTNSKTRYSQLRTTQNLSAFSSKSHLFSPSSTSSSYPKTFRTRSSTESGIFLPRLITSLEQVDQAYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCSKELAE 127          
The following BLAST results are available for this feature:
BLAST of CF504304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
NDK2_ARATH2.409e-2357.14Nucleoside diphosphate kinase II, chloroplastic OS... [more]
NDK2_SPIOL7.749e-2246.32Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK2_TOBAC5.022e-2150.00Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK2_PEA4.252e-2046.40Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-793 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504304 ID=CF504304; Name=CF504304; organism=Citrus sinensis; type=EST; length=473bp
GTGTAGGTGCGTTAGGTGTGTCATCATCACCAACTCTTGTTGGCAAGATA
AGTTGCAGCAGACGCTTATCCTACAGCTCCAACAAGCTTACCCTACGCAC
CACCAGCCACCTTGCAGCATTCCACTCACAGTCCCGTCTTTTCGTAAAAC
CCCCATCATGTCGTCGCCGCAGAACCGTTGCTCGCAACTCCAACGAAACC
GGCATCTTCCTTCCCCACTTGGTCGCTTCCATGGAACAAGTTGAGGAGAC
TTACATTATGGTGAAACCAGATGGTGTTCAACGTGGTCTGGTTGGCGAAA
TTATTTCAAGGTTTGAGAAGAAGGGATTCAAACTGATTGGCTTGAAGCTC
TTTCAATGCCCGAAAGATTTAGCTGAGGCCCGTTGTTGGGAGTATTTGTA
TTCCAGTTTTTGTTATTTGTGAAGATATGTCAACCAACATTTTTCACATA
CTTCATAAGTTAGATAATGCTTA
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