CF504305
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504305 vs. ExPASy Swiss-Prot
Match: TNPO1_MOUSE (Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 1.401e-22 Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1 Query: 208 LNQPVYLDILMPPLIAKWQLLPNSDKDLFPLLECFTSIAQALGAGFTQF 354 LN+P Y+ +LMPPLI KW +L + DKDLFPLLEC +S+A AL +GF + Sbjct: 564 LNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPY 612 HSP 2 Score: 57.3806 bits (137), Expect = 1.401e-22 Identity = 31/62 (50.00%), Postives = 36/62 (58.06%), Query Frame = 2 Query: 17 AGKRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 202 + KRVQEAACS IL L+ AF KYQ +NL I+YDAIGTLAD+VG Sbjct: 500 SNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVG 561
BLAST of CF504305 vs. ExPASy Swiss-Prot
Match: TNPO1_HUMAN (Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 1.401e-22 Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1 Query: 208 LNQPVYLDILMPPLIAKWQLLPNSDKDLFPLLECFTSIAQALGAGFTQF 354 LN+P Y+ +LMPPLI KW +L + DKDLFPLLEC +S+A AL +GF + Sbjct: 564 LNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPY 612 HSP 2 Score: 57.3806 bits (137), Expect = 1.401e-22 Identity = 31/62 (50.00%), Postives = 36/62 (58.06%), Query Frame = 2 Query: 17 AGKRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 202 + KRVQEAACS IL L+ AF KYQ +NL I+YDAIGTLAD+VG Sbjct: 500 SNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVG 561
BLAST of CF504305 vs. ExPASy Swiss-Prot
Match: TNPO1_BOVIN (Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 1.401e-22 Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1 Query: 208 LNQPVYLDILMPPLIAKWQLLPNSDKDLFPLLECFTSIAQALGAGFTQF 354 LN+P Y+ +LMPPLI KW +L + DKDLFPLLEC +S+A AL +GF + Sbjct: 564 LNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPY 612 HSP 2 Score: 57.3806 bits (137), Expect = 1.401e-22 Identity = 31/62 (50.00%), Postives = 36/62 (58.06%), Query Frame = 2 Query: 17 AGKRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 202 + KRVQEAACS IL L+ AF KYQ +NL I+YDAIGTLAD+VG Sbjct: 500 SNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVG 561
BLAST of CF504305 vs. ExPASy Swiss-Prot
Match: TNPO2_HUMAN (Transportin-2 OS=Homo sapiens GN=TNPO2 PE=1 SV=3) HSP 1 Score: 66.2402 bits (160), Expect = 1.401e-22 Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1 Query: 208 LNQPVYLDILMPPLIAKWQLLPNSDKDLFPLLECFTSIAQALGAGFTQF 354 LNQP Y+ LMPPLI KW L + DKDLFPLLEC +S+A AL +GF + Sbjct: 553 LNQPEYIQKLMPPLIQKWNELKDEDKDLFPLLECLSSVATALQSGFLPY 601 HSP 2 Score: 59.3066 bits (142), Expect = 1.401e-22 Identity = 32/60 (53.33%), Postives = 36/60 (60.00%), Query Frame = 2 Query: 23 KRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 202 KRVQEAACS IL L+ AFGKYQ +NL I+YDAIGTLAD+VG Sbjct: 491 KRVQEAACSAFATLEEEACTELVPYLSYILDTLVFAFGKYQHKNLLILYDAIGTLADSVG 550
BLAST of CF504305 vs. ExPASy Swiss-Prot
Match: TNPO2_MOUSE (Transportin-2 OS=Mus musculus GN=Tnpo2 PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 1.401e-22 Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1 Query: 208 LNQPVYLDILMPPLIAKWQLLPNSDKDLFPLLECFTSIAQALGAGFTQF 354 LNQP Y+ LMPPLI KW L + DKDLFPLLEC +S+A AL +GF + Sbjct: 553 LNQPEYIQKLMPPLIQKWNELKDEDKDLFPLLECLSSVATALQSGFLPY 601 HSP 2 Score: 59.3066 bits (142), Expect = 1.401e-22 Identity = 32/60 (53.33%), Postives = 36/60 (60.00%), Query Frame = 2 Query: 23 KRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 202 KRVQEAACS IL L+ AFGKYQ +NL I+YDAIGTLAD+VG Sbjct: 491 KRVQEAACSAFATLEEEACTELVPYLSYILDTLVFAFGKYQHKNLLILYDAIGTLADSVG 550
BLAST of CF504305 vs. ExPASy Swiss-Prot
Match: IMB2_SCHPO (Importin subunit beta-2 OS=Schizosaccharomyces pombe GN=kap104 PE=2 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 4.202e-17 Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 1 Query: 208 LNQPVYLDILMPPLIAKWQLLPNSDKDLFPLLECFTSIAQALGAGFTQFA 357 LN Y+++L+ PL+ KW ++P+ D +LFPL EC +S+A AL GF FA Sbjct: 577 LNDKRYIELLITPLLQKWSMIPDDDPNLFPLFECLSSVAVALRDGFAPFA 626 HSP 2 Score: 48.9062 bits (115), Expect = 4.202e-17 Identity = 27/60 (45.00%), Postives = 33/60 (55.00%), Query Frame = 2 Query: 23 KRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 202 K+VQEA CS IL +L AF KYQR+N+ I+YDA+ TLAD VG Sbjct: 515 KKVQEAGCSAFAILEEQAGPSLVPYLEPILTNLAFAFQKYQRKNVLILYDAVQTLADYVG 574
BLAST of CF504305 vs. ExPASy Swiss-Prot
Match: TNPO_DICDI (Transportin OS=Dictyostelium discoideum GN=tnpo PE=3 SV=1) HSP 1 Score: 50.0618 bits (118), Expect = 7.932e-15 Identity = 28/60 (46.67%), Postives = 33/60 (55.00%), Query Frame = 2 Query: 23 KRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 202 K+VQEAACS +IL + AFGKYQ +NL I+YDAI TLA VG Sbjct: 528 KKVQEAACSAFATLEEEADLLLIPYLQMILVTFVNAFGKYQAKNLLILYDAISTLAKVVG 587 HSP 2 Score: 49.2914 bits (116), Expect = 7.932e-15 Identity = 20/46 (43.48%), Postives = 33/46 (71.74%), Query Frame = 1 Query: 205 QLNQPVYLDILMPPLIAKWQLLPNSDKDLFPLLECFTSIAQALGAG 342 +LN+P ++IL+PPL+ K+ L +S+K+L PLL C + ++GAG Sbjct: 589 ELNKPELINILVPPLLQKFNALDDSNKNLLPLLGCLNQVCSSIGAG 634 The following BLAST results are available for this feature:
BLAST of CF504305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF504305 ID=CF504305; Name=CF504305; organism=Citrus sinensis; type=EST; length=358bpback to top |