CF504354 | Citrus Genome Database

Overview


Name	CF504354
Unique Name	CF504354
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	401

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig12573	contig	Csv1_Contig12573:12..411.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN_VICFA (GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 4.996e-60
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 3

Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR
Sbjct:   25 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 113

HSP 2 Score: 52.7582 bits (125), Expect = 4.996e-60
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 2

Query:   62 MALPNQQTVDYPSFKLVIVGDGGT 133
            MALPNQQTVDYPSFKLVIVGDGGT
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGT 24

BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RANB1_TOBAC (GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 4.996e-60
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 3

Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR
Sbjct:   25 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 113

HSP 2 Score: 52.7582 bits (125), Expect = 4.996e-60
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 2

Query:   62 MALPNQQTVDYPSFKLVIVGDGGT 133
            MALPNQQTVDYPSFKLVIVGDGGT
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGT 24

BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN3_ARATH (GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 4.996e-60
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 3

Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR
Sbjct:   25 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 113

HSP 2 Score: 52.7582 bits (125), Expect = 4.996e-60
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 2

Query:   62 MALPNQQTVDYPSFKLVIVGDGGT 133
            MALPNQQTVDYPSFKLVIVGDGGT
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGT 24

BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN2_SOLLC (GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 4.996e-60
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 3

Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR
Sbjct:   25 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 113

HSP 2 Score: 52.7582 bits (125), Expect = 4.996e-60
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 2

Query:   62 MALPNQQTVDYPSFKLVIVGDGGT 133
            MALPNQQTVDYPSFKLVIVGDGGT
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGT 24

BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN2_ARATH (GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 4.996e-60
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 3

Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR
Sbjct:   25 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 113

HSP 2 Score: 52.7582 bits (125), Expect = 4.996e-60
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 2

Query:   62 MALPNQQTVDYPSFKLVIVGDGGT 133
            MALPNQQTVDYPSFKLVIVGDGGT
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGT 24

BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN1_SOLLC (GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 4.996e-60
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 3

Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR
Sbjct:   25 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 113

HSP 2 Score: 52.7582 bits (125), Expect = 4.996e-60
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 2

Query:   62 MALPNQQTVDYPSFKLVIVGDGGT 133
            MALPNQQTVDYPSFKLVIVGDGGT
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGT 24

BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN1_ARATH (GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 4.996e-60
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 3

Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR
Sbjct:   25 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 113

HSP 2 Score: 52.7582 bits (125), Expect = 4.996e-60
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 2

Query:   62 MALPNQQTVDYPSFKLVIVGDGGT 133
            MALPNQQTVDYPSFKLVIVGDGGT
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGT 24

BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSJ (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. japonica GN=RAN1 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.107e-59
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 3

Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT+RLTYKNVPTWHRDLCR
Sbjct:   25 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCR 113

HSP 2 Score: 52.7582 bits (125), Expect = 1.107e-59
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 2

Query:   62 MALPNQQTVDYPSFKLVIVGDGGT 133
            MALPNQQTVDYPSFKLVIVGDGGT
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGT 24

BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSI (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. indica GN=RAN1 PE=2 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 1.107e-59
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 3

Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT+RLTYKNVPTWHRDLCR
Sbjct:   25 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCR 113

HSP 2 Score: 52.7582 bits (125), Expect = 1.107e-59
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 2

Query:   62 MALPNQQTVDYPSFKLVIVGDGGT 133
            MALPNQQTVDYPSFKLVIVGDGGT
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGT 24

BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RANA1_TOBAC (GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 9.248e-59
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 3

Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR
Sbjct:   25 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 113

HSP 2 Score: 48.521 bits (114), Expect = 9.248e-59
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 2

Query:   62 MALPNQQTVDYPSFKLVIVGDGGT 133
            MALP QQ VDYPSFKLVIVGDGGT
Sbjct:    1 MALPGQQAVDYPSFKLVIVGDGGT 24

The following BLAST results are available for this feature:

BLAST of CF504354 vs. ExPASy Swiss-Prot

BLAST of CF504354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55


Match Name	E-value	Identity	Description
RAN_VICFA	4.996e-60	100.00	GTP-binding nuclear protein Ran/TC4 OS=Vicia faba ...	[more]
RANB1_TOBAC	4.996e-60	100.00	GTP-binding nuclear protein Ran-B1 OS=Nicotiana ta...	[more]
RAN3_ARATH	4.996e-60	100.00	GTP-binding nuclear protein Ran-3 OS=Arabidopsis t...	[more]
RAN2_SOLLC	4.996e-60	100.00	GTP-binding nuclear protein Ran2 OS=Solanum lycope...	[more]
RAN2_ARATH	4.996e-60	100.00	GTP-binding nuclear protein Ran-2 OS=Arabidopsis t...	[more]
RAN1_SOLLC	4.996e-60	100.00	GTP-binding nuclear protein Ran1 OS=Solanum lycope...	[more]
RAN1_ARATH	4.996e-60	100.00	GTP-binding nuclear protein Ran-1 OS=Arabidopsis t...	[more]
RAN1_ORYSJ	1.107e-59	98.88	GTP-binding nuclear protein Ran-1 OS=Oryza sativa ...	[more]
RAN1_ORYSI	1.107e-59	98.88	GTP-binding nuclear protein Ran-1 OS=Oryza sativa ...	[more]
RANA1_TOBAC	9.248e-59	100.00	GTP-binding nuclear protein Ran-A1 OS=Nicotiana ta...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_119000-843 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_D02 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504354 ID=CF504354; Name=CF504354; organism=Citrus sinensis; type=EST; length=401bp
ATTCCCCGACACTGAGCGCTCTCTCGCTTAAATTCAAAATCCAAACGCAA
CAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGTTGATTATCCAAGC
TTCAAACTTGTAATTGTCGGCGATGGTGGCACCTGGGAAGACTACCTTTG
TGAAGAGGCATCTTACTGGTGAATTCGAGAAGAAATATGAACCGACCATT
GGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTGTGGAAAAATACG
ATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGGTCTTAGAG
ATGGATACTACATCCATGGGCAATGTGCTATCATCATGTTTGATGTTACT
GCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACCGTGATCTCTGCAG
G