CF504373
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504373 vs. ExPASy Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 6.683e-20 Identity = 54/83 (65.06%), Postives = 59/83 (71.08%), Query Frame = 1 Query: 4 MAATTQASLFAPANFSTTKSSAPWKQS-SSFSVRPLKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGST 249 MA TQASLF PA S KSSAPWKQS +SFS + LK I+AMAE + T EAPVGFTPP+LDPNTPSPIFGGST Sbjct: 1 MAMATQASLFTPA-LSAPKSSAPWKQSLASFSPKQLKSTVSAPRPIRAMAE-EAATKEAEAPVGFTPPQLDPNTPSPIFGGST 81
BLAST of CF504373 vs. ExPASy Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 2.628e-16 Identity = 49/85 (57.65%), Postives = 54/85 (63.53%), Query Frame = 1 Query: 4 MAATTQASLFAPANFSTTKSSAPWKQSS-SFSV-RPLKHNAPRTNTIKAMAE-GKTETPTKEAPVGFTPPELDPNTPSPIFGGST 249 MA TQASLF P ++APWKQS SFS + LK T I+AMAE T K AP GFTPP+LDPNTPSPIFGGST Sbjct: 1 MAMATQASLFTPPLSVPKSTTAPWKQSLVSFSTPKQLKSTVSVTRPIRAMAEEAPAATEEKPAPAGFTPPQLDPNTPSPIFGGST 85
BLAST of CF504373 vs. ExPASy Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.156e-14 Identity = 46/88 (52.27%), Postives = 55/88 (62.50%), Query Frame = 1 Query: 4 MAATTQASLFAPANFSTTKS---SAPWKQSSSFSV---RPLKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGST 249 MA TQA+LF P+ ST KS S PWKQSS+ S +P A + + K AE +T EAP GF+PPELDP+TPSPIF GST Sbjct: 1 MAMATQATLFTPS-LSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV---EAPAGFSPPELDPSTPSPIFAGST 84
BLAST of CF504373 vs. ExPASy Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 1.221e-13 Identity = 47/92 (51.09%), Postives = 61/92 (66.30%), Query Frame = 1 Query: 4 MAATTQASLFAPANFST-----TKSSAPWKQSSS--FSVRPL-KHNAPRTNTIKAMAEGKTE--TPTKEAPVGFTPPELDPNTPSPIFGGST 249 MA TQA+LF+P++ S+ T+ + +KQ S+ F+ +P +H++ R A AEGK T TKEAP GFTPPELDPNTPSPIF GST Sbjct: 1 MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFASKPASRHHSIRA---AAAAEGKAAAATETKEAPKGFTPPELDPNTPSPIFAGST 89
BLAST of CF504373 vs. ExPASy Swiss-Prot
Match: PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.406e-11 Identity = 39/81 (48.15%), Postives = 47/81 (58.02%), Query Frame = 1 Query: 10 ATTQASLFAPANFSTTKSSAPWKQSSSFSVRPLKHNAPRTNTIKAMAEGKTETPT-KEAPVGFTPPELDPNTPSPIFGGST 249 AT A +F+PA +TT S+ S S RP + +T E + P KEAPVGFTPP+LDPNTPSPIF GST Sbjct: 2 ATQAAGIFSPA-ITTTTSAVKKLHLFSSSHRPKSLSFTKTAIRAEKTESSSAAPAVKEAPVGFTPPQLDPNTPSPIFAGST 81 The following BLAST results are available for this feature:
BLAST of CF504373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF504373 ID=CF504373; Name=CF504373; organism=Citrus sinensis; type=EST; length=250bpback to top |