CF504375
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX8_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2) HSP 1 Score: 188.734 bits (478), Expect = 7.770e-48 Identity = 95/107 (88.79%), Postives = 103/107 (96.26%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322 NL TTLTMKAMGIN+LLSFDF+DPP PQALISAMEQLYSLGALDEEGLLTKLG+KMAEFPL+PPLSKMLLASVDLGCSDEILT+IAMIQTG+IF RPREKQA+AD+ Sbjct: 874 NLGMTTLTMKAMGINDLLSFDFMDPPQPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCSDEILTMIAMIQTGNIFYRPREKQAQADQ 980
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX8_DICDI (ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 1.854e-41 Identity = 81/107 (75.70%), Postives = 96/107 (89.72%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322 NL +T LTMKAMGIN+LL+FDF+DPP Q L+SAMEQLYSLGALDEEGLLT+LG+KMAEFPLDP LSKML+ASVDLGCSDEILT++AM+ ++F RP+EKQA AD+ Sbjct: 867 NLGNTVLTMKAMGINDLLNFDFMDPPPVQTLVSAMEQLYSLGALDEEGLLTRLGRKMAEFPLDPQLSKMLIASVDLGCSDEILTVVAMLSVQNVFYRPKEKQALADQ 973
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX8_MOUSE (ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 1.287e-34 Identity = 68/107 (63.55%), Postives = 91/107 (85.05%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322 NL T L++KAMGIN+LLSFDF+D P + LI+AMEQLY+LGALD+EGLLT+LG++MAEFPL+P L KML+ SV LGCS+E+LTI++M+ ++F RP++KQA AD+ Sbjct: 948 NLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQ 1054
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX8_HUMAN (ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 1.287e-34 Identity = 68/107 (63.55%), Postives = 91/107 (85.05%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322 NL T L++KAMGIN+LLSFDF+D P + LI+AMEQLY+LGALD+EGLLT+LG++MAEFPL+P L KML+ SV LGCS+E+LTI++M+ ++F RP++KQA AD+ Sbjct: 924 NLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQ 1030
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: PRP22_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 OS=Schizosaccharomyces pombe GN=prp22 PE=2 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 3.744e-34 Identity = 66/106 (62.26%), Postives = 91/106 (85.85%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKAD 319 NL HT L +KAMGIN+LL+FDF+DPP Q +I+A++ LY+L ALD+EGLLT LG+KMA+FP++P LSK+L+ SV+LGCS+E+L+IIAM+ +I++RPREKQ +AD Sbjct: 870 NLSHTILMLKAMGINDLLNFDFMDPPPAQTMIAALQNLYALSALDDEGLLTPLGRKMADFPMEPQLSKVLITSVELGCSEEMLSIIAMLSVPNIWSRPREKQQEAD 975
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: MOG5_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans GN=mog-5 PE=2 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 5.977e-32 Identity = 64/107 (59.81%), Postives = 86/107 (80.37%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322 NL T L +KAMGINNL+ FDF+D P ++I+A+ L++L ALD +GLLTKLG++MAEFPL+P LSK+L+ SVDLGCS+E+LTI+AM+ +IF RP+EKQ AD+ Sbjct: 899 NLASTLLQLKAMGINNLIDFDFMDAPPLDSMITALNTLHTLSALDGDGLLTKLGRRMAEFPLEPSLSKLLIMSVDLGCSEEVLTIVAMLNVQNIFYRPKEKQDHADQ 1005
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX16_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 5.594e-30 Identity = 64/107 (59.81%), Postives = 85/107 (79.44%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGH-IFTRPREKQAKAD 319 NL + L +K+MGIN+L++FDF+DPP Q LI+A+EQLY+LGAL++ G LTKLG+KMAEFP+DP LSKM++AS CS+EILTI AM+ G+ IF RP++K AD Sbjct: 826 NLGNVVLLLKSMGINDLMNFDFMDPPPAQTLIAALEQLYALGALNDRGQLTKLGRKMAEFPVDPQLSKMIIASEKYKCSEEILTICAMLSVGNTIFYRPKDKAFAAD 932
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: PRP22_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 OS=Saccharomyces cerevisiae GN=PRP22 PE=1 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 3.626e-29 Identity = 59/106 (55.66%), Postives = 83/106 (78.30%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKAD 319 NL HT L +KAMGIN+LL FDF+DPP +++A+ +LY L +LD+EG LT LGK+M+ FP+DP LS+ LL+SVD CSDEI+TII+M+ ++F RP+++Q +AD Sbjct: 842 NLSHTILMLKAMGINDLLKFDFMDPPPKNLMLNALTELYHLQSLDDEGKLTNLGKEMSLFPMDPTLSRSLLSSVDNQCSDEIVTIISMLSVQNVFYRPKDRQLEAD 947
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX15_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 1.800e-28 Identity = 59/107 (55.14%), Postives = 81/107 (75.70%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322 NL +T LT+K +GI++L+ FDF+DPP+P+ L+ A+E L LGALD+EG LTK G+ M+EFPLDP +SKML+ S + CS+EIL++ AM+ + F RPRE Q ADE Sbjct: 437 NLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTKTGEIMSEFPLDPQMSKMLIVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAADE 543
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: MOG1_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 OS=Caenorhabditis elegans GN=mog-1 PE=2 SV=2) HSP 1 Score: 116.701 bits (291), Expect = 3.752e-26 Identity = 52/106 (49.06%), Postives = 79/106 (74.53%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKAD 319 NL + L +K++G+++LL F F+D P ++++M QL++LGALD G LT +G+KM EFPLDP LSKML+ S ++GCSDE+LTI++M+ IF RP+ ++ +AD Sbjct: 800 NLANVVLLLKSLGVDDLLKFHFMDAPPQDNMLNSMYQLWTLGALDNTGQLTPMGRKMVEFPLDPTLSKMLIMSAEMGCSDEVLTIVSMLSVPAIFFRPKGREEEAD 905 The following BLAST results are available for this feature:
BLAST of CF504375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 48
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504375 ID=CF504375; Name=CF504375; organism=Citrus sinensis; type=EST; length=324bpback to top |