CF509969

Overview
NameCF509969
Unique NameCF509969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12383 contig Csv1_Contig12383:34..627. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509969 vs. ExPASy Swiss-Prot
Match: IF2P_SCHPO (Eukaryotic translation initiation factor 5B OS=Schizosaccharomyces pombe GN=SPAC56F8.03 PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.027e-58
Identity = 118/196 (60.20%), Postives = 146/196 (74.49%), Query Frame = 2
Query:    2 ELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNKK 589
            E+RVK  Y+HHK+IKAA G+KI A  LE A+AG+ L VVGPDDD ED+ EE MED+++++ RID SG GV VQASTLGSLEALLEFLK   +KIPV+ ++IGPV+KKDVMR + MLEK KEYA +L FDVKV  +A +LAE+LGVKIF A++IYHLFD FTA+   +            VFPCVLK +    FNK+
Sbjct:  765 EMRVKSAYVHHKEIKAAMGVKICANDLEKAVAGSRLLVVGPDDDEEDLAEEIMEDLENLLGRIDTSGIGVSVQASTLGSLEALLEFLKQ--MKIPVASVNIGPVYKKDVMRCATMLEKAKEYALMLCFDVKVDRDAEDLAEQLGVKIFSANVIYHLFDAFTAHQKKILEQKREESSDVAVFPCVLKTV--AAFNKR 956          
BLAST of CF509969 vs. ExPASy Swiss-Prot
Match: IF2P_YEAST (Eukaryotic translation initiation factor 5B OS=Saccharomyces cerevisiae GN=FUN12 PE=1 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 4.936e-53
Identity = 104/196 (53.06%), Postives = 140/196 (71.43%), Query Frame = 2
Query:    2 ELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNKK 589
            ELR+K  Y+HHK++KAA G+KI A  LE A++G+ L VVGP+DD +++ ++ M+D+  ++  +D +G+GV VQASTLGSLEALL+FLK   +KIPV  I +GPV+K+DVM+AS MLEK  EYA +L FDVKV  EA + AE+ G+KIF AD+IYHLFD FTAY   L            +FPCVL+ L   + NK+
Sbjct:  686 ELRLKSEYVHHKEVKAALGVKIAANDLEKAVSGSRLLVVGPEDDEDELMDDVMDDLTGLLDSVDTTGKGVVVQASTLGSLEALLDFLKD--MKIPVMSIGLGPVYKRDVMKASTMLEKAPEYAVMLCFDVKVDKEAEQYAEQEGIKIFNADVIYHLFDSFTAYQEKLLEERRKDFLDYAIFPCVLQTLQ--IINKR 877          
BLAST of CF509969 vs. ExPASy Swiss-Prot
Match: IF2P_RAT (Eukaryotic translation initiation factor 5B OS=Rattus norvegicus GN=Eif5b PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 8.712e-50
Identity = 101/196 (51.53%), Postives = 136/196 (69.39%), Query Frame = 2
Query:    2 ELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNKK 589
            ELRVK  Y  HK+++AAQG+KI  + LE  +AG  L V   DD++  +K+E + ++K  ++ I    +GV VQASTLGSLEALLEFLK+   ++P +GI+IGPVHKKDVM+ASVMLE   +YA ILAFDV++  +A+E+A+ LGV+IF A+IIYHLFD FT Y  +             VFPC +KILP  +FN +
Sbjct:  908 ELRVKNQYEKHKEVEAAQGVKILGKDLEKTLAGLPLLVAYKDDEIPVLKDELIHELKQTLNAIKLEEKGVYVQASTLGSLEALLEFLKTS--EVPYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERDAQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEEFKHIAVFPCKMKILPQYIFNSR 1101          
BLAST of CF509969 vs. ExPASy Swiss-Prot
Match: IF2P_MOUSE (Eukaryotic translation initiation factor 5B OS=Mus musculus GN=Eif5b PE=1 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 8.712e-50
Identity = 101/196 (51.53%), Postives = 136/196 (69.39%), Query Frame = 2
Query:    2 ELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNKK 589
            ELRVK  Y  HK+++AAQG+KI  + LE  +AG  L V   DD++  +K+E + ++K  ++ I    +GV VQASTLGSLEALLEFLK+   ++P +GI+IGPVHKKDVM+ASVMLE   +YA ILAFDV++  +A+E+A+ LGV+IF A+IIYHLFD FT Y  +             VFPC +KILP  +FN +
Sbjct:  908 ELRVKNQYEKHKEVEAAQGVKILGKDLEKTLAGLPLLVAYKDDEIPVLKDELIHELKQTLNAIKLEEKGVYVQASTLGSLEALLEFLKTS--EVPYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERDAQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEEFKHIAVFPCKMKILPQYIFNSR 1101          
BLAST of CF509969 vs. ExPASy Swiss-Prot
Match: IF2P_PONAB (Eukaryotic translation initiation factor 5B OS=Pongo abelii GN=EIF5B PE=2 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 2.535e-49
Identity = 100/196 (51.02%), Postives = 136/196 (69.39%), Query Frame = 2
Query:    2 ELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNKK 589
            ELRVK  Y  HK+++AAQG+KI  + LE  +AG  L V   +D++  +K+E + ++K  ++ I    +GV VQASTLGSLEALLEFLK+   ++P +GI+IGPVHKKDVM+ASVMLE   +YA ILAFDV++  +A+E+A+ LGV+IF A+IIYHLFD FT Y  +             VFPC +KILP  +FN +
Sbjct:  912 ELRVKNQYEKHKEVEAAQGVKILGKDLEKTLAGLPLLVAYKEDEIPVLKDELIHELKQTLNAIKLEEKGVYVQASTLGSLEALLEFLKTS--EVPYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERDAQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEKFKHIAVFPCKMKILPQYIFNSR 1105          
BLAST of CF509969 vs. ExPASy Swiss-Prot
Match: IF2P_HUMAN (Eukaryotic translation initiation factor 5B OS=Homo sapiens GN=EIF5B PE=1 SV=4)

HSP 1 Score: 194.897 bits (494), Expect = 2.535e-49
Identity = 100/196 (51.02%), Postives = 136/196 (69.39%), Query Frame = 2
Query:    2 ELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNKK 589
            ELRVK  Y  HK+++AAQG+KI  + LE  +AG  L V   +D++  +K+E + ++K  ++ I    +GV VQASTLGSLEALLEFLK+   ++P +GI+IGPVHKKDVM+ASVMLE   +YA ILAFDV++  +A+E+A+ LGV+IF A+IIYHLFD FT Y  +             VFPC +KILP  +FN +
Sbjct:  912 ELRVKNQYEKHKEVEAAQGVKILGKDLEKTLAGLPLLVAYKEDEIPVLKDELIHELKQTLNAIKLEEKGVYVQASTLGSLEALLEFLKTS--EVPYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERDAQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEEFKHIAVFPCKIKILPQYIFNSR 1105          
BLAST of CF509969 vs. ExPASy Swiss-Prot
Match: IF2P_DICDI (Eukaryotic translation initiation factor 5B OS=Dictyostelium discoideum GN=eif5b PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.920e-42
Identity = 86/187 (45.99%), Postives = 125/187 (66.84%), Query Frame = 2
Query:    2 ELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKI 562
            E RVK  +++HK I+AA GIKI A GLE A+ GT L+VVGP+DD+E ++ EA  ++ SV++ ++ SG GV VQASTLGSLEA L FLK   +KIPV+ ++IGPVHKK +M AS+ML+K  +YA +LAFDVK+   A + A E+ V++   + IY   ++   +   +            V+PC+L++
Sbjct:  741 ESRVKSQFINHKSIRAAMGIKIVAPGLEKAVPGTSLHVVGPNDDIEKIRAEAKREVDSVLNDVETSGIGVSVQASTLGSLEAFLNFLKK--IKIPVANVAIGPVHKKHIMNASIMLDKDPKYAILLAFDVKIEESAIQAANEMKVQVLSDETIYLFEEKLKKHFGAIKEKLRAETASICVWPCILEV 925          
BLAST of CF509969 vs. ExPASy Swiss-Prot
Match: IF2P_IGNH4 (Probable translation initiation factor IF-2 OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=infB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.221e-35
Identity = 83/195 (42.56%), Postives = 121/195 (62.05%), Query Frame = 2
Query:    2 ELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNK 586
            E+R    +   +++ AA G+KI A GLE A+AG  +YVV   + LE++KE+   +++ VM   DK  EGV V+A TLG+LEAL++FLK+    IPV    +GPV K+D++ A  +  K KEY  ILAF+VKV PEA+ELAE+ G+KIF  ++IY L ++F  ++  L            V P  ++ILP  VF +
Sbjct:  297 EMRATKRFEPVEEVSAAAGVKIVAPGLEKAVAGAPVYVVDSPEKLEELKEQVKREVEEVMIETDK--EGVIVKADTLGTLEALVQFLKNRG--IPVRMARVGPVTKRDIVEAMTVKSKNKEYGVILAFNVKVLPEAKELAEKEGIKIFQHNVIYRLIEEFEEWLKALREEEKRKVLETLVRPGKIRILPGFVFRR 487          
BLAST of CF509969 vs. ExPASy Swiss-Prot
Match: IF2P_STAMF (Probable translation initiation factor IF-2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=infB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.107e-28
Identity = 71/191 (37.17%), Postives = 113/191 (59.16%), Query Frame = 2
Query:   14 KGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNK 586
            +G ++  +Q+ AA G+KI+A  L++A+AG+ ++VV  +D +E+  +   E+++SV  RI     GV V+A TLG+LEA++E LK +   IPV    +GPV K DV+ ASV    + EY  I+AF+VK+ PEA E A    VKIF  ++IY L + +  ++  L            + P  ++ILP  +F +
Sbjct:  301 EGKFVSVEQVVAATGVKISAPDLDNALAGSPIFVVPSEDKIEEYIKIVKEEIESV--RIKTDNIGVVVKADTLGTLEAVVEALKRE--NIPVRLADVGPVSKNDVLEASVSKNHRPEYGVIIAFNVKILPEAEEYAARENVKIFRHNVIYKLIEDYIGWVKQLREQEKIKELESLIRPGKIRILPGYIFRR 487          
BLAST of CF509969 vs. ExPASy Swiss-Prot
Match: IF2P_METKA (Probable translation initiation factor IF-2 OS=Methanopyrus kandleri GN=infB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.935e-27
Identity = 69/184 (37.50%), Postives = 106/184 (57.61%), Query Frame = 2
Query:   38 QIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALL-EFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNK 586
            ++ AA G+KI+A  LE A+AG  L VVG D+D+E+V  E  E+++ V    D+  EG+ ++A TLG+LEA++ EF + D   +P+    +G + KKDV+ A  + EK      I+ F+V VT EARELA+E  V I I D+IY L +++   +               V P  +K+LP  +F +
Sbjct:  306 EVTAAAGVKISAPELEEAVAGAPLRVVGEDEDVEEVVREVQEEVEEVTIETDQ--EGIIIKADTLGTLEAVVGEFKEKD---VPIRKADVGDITKKDVIEAHAVAEKDPLLGVIVGFNVGVTEEARELADEYDVDIIIDDVIYELVEKYEEMVEKRIERERRKRLDELVRPGKIKVLPGYIFRQ 484          
The following BLAST results are available for this feature:
BLAST of CF509969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
IF2P_SCHPO1.027e-5860.20Eukaryotic translation initiation factor 5B OS=Sch... [more]
IF2P_YEAST4.936e-5353.06Eukaryotic translation initiation factor 5B OS=Sac... [more]
IF2P_RAT8.712e-5051.53Eukaryotic translation initiation factor 5B OS=Rat... [more]
IF2P_MOUSE8.712e-5051.53Eukaryotic translation initiation factor 5B OS=Mus... [more]
IF2P_PONAB2.535e-4951.02Eukaryotic translation initiation factor 5B OS=Pon... [more]
IF2P_HUMAN2.535e-4951.02Eukaryotic translation initiation factor 5B OS=Hom... [more]
IF2P_DICDI3.920e-4245.99Eukaryotic translation initiation factor 5B OS=Dic... [more]
IF2P_IGNH41.221e-3542.56Probable translation initiation factor IF-2 OS=Ign... [more]
IF2P_STAMF1.107e-2837.17Probable translation initiation factor IF-2 OS=Sta... [more]
IF2P_METKA7.935e-2737.50Probable translation initiation factor IF-2 OS=Met... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-483 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509969 ID=CF509969; Name=CF509969; organism=Citrus sinensis; type=EST; length=594bp
GGAACTGCGTGTTAAGGGGACTTACCTGCACCATAAACAGATCAAGGCTG
CACAGGGTATTAAGATTACTGCCCAGGGCCTCGAGCATGCTATTGCTGGC
ACTGGTCTGTATGTGGTTGGGCCTGATGATGATTTGGAAGATGTCAAGGA
AGAAGCAATGGAAGATATGAAATCAGTCATGAGCAGGATTGACAAAAGTG
GTGAGGGTGTTTGTGTACAAGCATCTACCTTAGGCTCTTTGGAAGCATTG
CTGGAATTCTTGAAGTCCGATGCTGTTAAGATTCCTGTCAGTGGTATAAG
CATAGGTCCTGTACATAAGAAAGATGTCATGAGGGCTAGTGTAATGCTTG
AGAAGAAAAAGGAGTATGCAACTATCTTGGCATTTGACGTCAAAGTTACA
CCGGAGGCTCGGGAACTTGCAGAAGAACTGGGTGTAAAGATTTTCATTGC
TGATATTATTTACCATTTATTCGATCAATTCACAGCTTATATTAATAATC
TCAAGGAGGAGAAGAAGAGGGAAGCTGCTGATGAAGCTGTCTTCCCATGT
GTTCTCAAGATTTTACCAAACTGTGTTTTCAACAAGAAGATCCA
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