CF510159

Overview
NameCF510159
Unique NameCF510159
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length316
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF510159_ssr48 microsatellite CF510159_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF510159 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.614e-16
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 2
Query:   20 SVSLLAAAMEKERKLKNEVNANGVVE----KGDSFDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSY 208
            +VS ++   ++ER+       NG+V     KG+ FD  APPPF + +IRAAIPKHCWVKNPWRS+SY
Sbjct:   73 NVSTVSGEDDRERE-----EFNGIVNVDEGKGEFFDAGAPPPFTLADIRAAIPKHCWVKNPWRSMSY 134          

HSP 2 Score: 30.8018 bits (68), Expect = 4.614e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 3
Query:  258 HFNTWFFWPLYWGC 299
            +FN W  WPLYW C
Sbjct:  151 YFNNWVAWPLYWFC 164          
BLAST of CF510159 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.000e-16
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 2
Query:   20 SVSLLAAAMEKERKLKNEVNA-NGVV-EKGDSFDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSY 208
            S  L  A++E+E+K  +  N  NGV  EK   FDP APPPF + +IRAAIPKHCWVK+PWRS+SY
Sbjct:   64 SAPLRVASIEEEQKSVDLTNGTNGVEHEKLPEFDPGAPPPFNLADIRAAIPKHCWVKDPWRSMSY 128          

HSP 2 Score: 26.9498 bits (58), Expect = 6.000e-16
Identity = 7/12 (58.33%), Postives = 8/12 (66.67%), Query Frame = 3
Query:  258 HFNTWFFWPLYW 293
            + N W  WPLYW
Sbjct:  145 YLNNWLVWPLYW 156          
BLAST of CF510159 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.025e-16
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 2
Query:   65 KNEVNANGVVEKGDSFDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYCTQ 217
            ++ VN +    K + FDP+A PPFKIG+IRAAIPKHCWVK+P RS+SY T+
Sbjct:    8 RSNVNGDSGARKEEGFDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVTR 58          

HSP 2 Score: 30.4166 bits (67), Expect = 6.025e-16
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  258 HFNTWFFWPLYW 293
            +F++WF WPLYW
Sbjct:   72 YFDSWFLWPLYW 83          
BLAST of CF510159 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.317e-15
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 2
Query:    2 ESSFHFSVSLLAAAMEKERKLKNEVNANGVVEKGDSFDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYCTQRFA 226
            E ++   VS     ++ E + +N+     V+  G+ FDP APPPFK+ +IR AIPKHCWVK+PWRS+ Y  +  A
Sbjct:   57 EKNWALRVSAPLRVLQVEEEEENK-EGERVINGGEEFDPGAPPPFKLSDIREAIPKHCWVKDPWRSMGYVVRDVA 130          

HSP 2 Score: 28.8758 bits (63), Expect = 1.317e-15
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 3
Query:  258 HFNTWFFWPLYW 293
            +FN W  WPLYW
Sbjct:  141 YFNNWVVWPLYW 152          
BLAST of CF510159 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.371e-15
Identity = 38/57 (66.67%), Postives = 42/57 (73.68%), Query Frame = 2
Query:   44 MEKERKLKNEVNANGVVEKGDSFD--PAAPPPFKIGEIRAAIPKHCWVKNPWRSLSY 208
            M K+ K       NG  +KG SFD  P+APPPFKI EIRA+IPKHCWVKNPWRSLSY
Sbjct:    1 MVKDTKPLAYAANNGYQQKGSSFDFDPSAPPPFKIAEIRASIPKHCWVKNPWRSLSY 57          

HSP 2 Score: 21.1718 bits (43), Expect = 6.371e-15
Identity = 5/11 (45.45%), Postives = 7/11 (63.64%), Query Frame = 3
Query:  258 HFNTWFFWPLY 290
            HF+ W  W +Y
Sbjct:   74 HFDNWLLWLIY 84          
BLAST of CF510159 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.809e-14
Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 2
Query:   95 EKGDSFDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYCTQRFA 226
            E  + FDP APPPF + +IRAAIPKHCWVKNPW S+SY  +  A
Sbjct:   76 EDTERFDPGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVA 119          

HSP 2 Score: 29.6462 bits (65), Expect = 1.809e-14
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 3
Query:  258 HFNTWFFWPLYW 293
            +FN W  WPLYW
Sbjct:  130 YFNNWLLWPLYW 141          
BLAST of CF510159 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.355e-14
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 2
Query:   98 KGDSFDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYCTQRFACGSCIAS 247
            K   FDP APPPF + +IRAAIPKHCWVKNPW+S+SY  +  A    +A+
Sbjct:   42 KTQRFDPGAPPPFNLADIRAAIPKHCWVKNPWKSMSYVVRELAIVFALAA 91          

HSP 2 Score: 26.9498 bits (58), Expect = 2.355e-14
Identity = 7/12 (58.33%), Postives = 8/12 (66.67%), Query Frame = 3
Query:  258 HFNTWFFWPLYW 293
            + N W  WPLYW
Sbjct:   95 YLNNWLVWPLYW 106          
BLAST of CF510159 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.981e-14
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 2
Query:   32 LAAAMEKERKLKNEVNANGVVEKGDSFDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYCTQRFACGSCIA 244
            +  AM++   +  +  A G  +K + FDP+A PPFKIG+IRAAIPKHCWVK+P RS+SY  +     + +A
Sbjct:    1 MVVAMDQRTNVNGDPGA-GDRKKEERFDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDIIAVAALA 70          

HSP 2 Score: 27.7202 bits (60), Expect = 3.981e-14
Identity = 7/12 (58.33%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  258 HFNTWFFWPLYW 293
            + ++WF WPLYW
Sbjct:   75 YVDSWFLWPLYW 86          
BLAST of CF510159 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.151e-14
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 2
Query:  110 FDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYCTQRFACGSCIAS 247
            FDP APPPF + +IRAAIPKHCWVKNPW+SLSY  +  A    +A+
Sbjct:   88 FDPGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAA 133          

HSP 2 Score: 26.9498 bits (58), Expect = 5.151e-14
Identity = 7/12 (58.33%), Postives = 8/12 (66.67%), Query Frame = 3
Query:  258 HFNTWFFWPLYW 293
            + N W  WPLYW
Sbjct:  137 YLNNWIVWPLYW 148          
BLAST of CF510159 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 8.732e-14
Identity = 32/60 (53.33%), Postives = 38/60 (63.33%), Query Frame = 2
Query:   83 NGVVEKGDS-FDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYCTQRFACGSCIASCCYS 259
            NG  E   S FDP APPPFKI +IRAAIPKHCW K+  RSLSY  +     + +A+   S
Sbjct:   12 NGAREGDQSYFDPGAPPPFKIADIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAIS 71          

HSP 2 Score: 33.8834 bits (76), Expect = 8.732e-14
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 3
Query:  261 FNTWFFWPLYW 293
            FN+WFFWPLYW
Sbjct:   72 FNSWFFWPLYW 82          
The following BLAST results are available for this feature:
BLAST of CF510159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
FAD3C_RICCO4.614e-1652.24Omega-3 fatty acid desaturase, chloroplastic OS=Ri... [more]
FAD3C_SOYBN6.000e-1658.46Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD3E_BRANA6.025e-1660.78Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_SESIN1.317e-1544.00Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
FAD3E_SOYBN6.371e-1566.67Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3D_ARATH1.809e-1463.64Temperature-sensitive omega-3 fatty acid desaturas... [more]
FAD3C_BRANA2.355e-1458.00Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]
FAD3E_ARATH3.981e-1446.48Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_ARATH5.151e-1463.04Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD3E_PHAAU8.732e-1453.33Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-674 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510159 ID=CF510159; Name=CF510159; organism=Citrus sinensis; type=EST; length=316bp
AGAAAGCTCATTTCACTTCTCGGTTTCTTTGCTTGCTGCTGCAATGGAGA
AAGAAAGAAAGCTCAAGAATGAAGTGAATGCCAATGGGGTTGTTGAGAAA
GGAGATTCCTTTGACCCAGCAGCTCCTCCTCCATTCAAGATTGGCGAGAT
CCGTGCTGCCATTCCAAAGCATTGCTGGGTCAAGAATCCATGGAGGTCTT
TGAGCTATTGTACTCAGAGATTTGCTTGTGGTTCTTGCATTGCTAGCTGC
TGCTACTCACTTCAACACTTGGTTCTTTTGGCCTCTCTATTGGGGTTGCT
CAAGGAACCATTGTTT
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