CF510199

Overview
NameCF510199
Unique NameCF510199
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length210
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5764 contig Csv1_Contig5764:794..1003. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510199 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 4.966e-23
Identity = 55/65 (84.62%), Postives = 58/65 (89.23%), Query Frame = 1
Query:    1 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMG 195
            QELGKQNP L+RLIQEHQ DFLRLINEPVE GE NV+ QL +AMPQAVTVTPEEREAIERLE MG
Sbjct:  281 QELGKQNPQLVRLIQEHQADFLRLINEPVE-GEENVMEQLEAAMPQAVTVTPEEREAIERLEGMG 344          
BLAST of CF510199 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 5.491e-22
Identity = 54/69 (78.26%), Postives = 60/69 (86.96%), Query Frame = 1
Query:    1 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGG--EGNVLGQLASAM--PQAVTVTPEEREAIERLEAMG 195
            QELGKQNP+LMRLIQ+HQ DFLRLINEPVEGG   GN+LGQ+A+ M  PQA+ VT EEREAIERLEAMG
Sbjct:  318 QELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMG 386          
BLAST of CF510199 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.387e-17
Identity = 43/67 (64.18%), Postives = 53/67 (79.10%), Query Frame = 1
Query:    1 QELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMG 195
            QELGKQNP L+RLIQE+Q +FL+L+NEP EG  GEG++  Q    MP A+ VTP E+EAI+RLEAMG
Sbjct:  272 QELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMG 338          
BLAST of CF510199 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.118e-17
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    1 QELGKQNPHLMRLIQEHQTDFLRLINEPVEG-GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMG 195
            QELGKQNP +++LIQE+Q +FL LINEP EG  E N+L Q   AMPQ + VTPEE EAI RLEAMG
Sbjct:  290 QELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMG 355          
BLAST of CF510199 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.946e-17
Identity = 43/67 (64.18%), Postives = 53/67 (79.10%), Query Frame = 1
Query:    1 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--LGQLASAMPQAVTVTPEEREAIERLEAMG 195
            QELGKQNP L+RLIQE+Q +FL+L+NEP EG +G+V    Q    MP +V VTPEE+E+IERLEAMG
Sbjct:  269 QELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMG 335          
The following BLAST results are available for this feature:
BLAST of CF510199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RD23D_ARATH4.966e-2384.62Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RD23C_ARATH5.491e-2278.26Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RD23A_ARATH2.387e-1764.18Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RAD23_ORYSJ3.118e-1766.67Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23B_ARATH6.946e-1764.18Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-714 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510199 ID=CF510199; Name=CF510199; organism=Citrus sinensis; type=EST; length=210bp
CAGGAACTTGGGAAGCAAAATCCACACCTGATGCGACTCATTCAAGAGCA
TCAGACTGACTTCTTGCGTTTGATAAATGAGCCCGTTGAAGGAGGAGAGG
GGAATGTACTGGGTCAGTTGGCCTCAGCAATGCCACAGGCTGTGACTGTA
ACCCCTGAGGAGAGAGAAGCTATCGAACGTCTTGAAGCAATGGGCCTTTG
ATCGTGCCCT
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