CF831977
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_ARATH (60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3) HSP 1 Score: 191.045 bits (484), Expect = 1.832e-53 Identity = 94/102 (92.16%), Postives = 97/102 (95.10%), Query Frame = -1 Query: 164 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPIG 469 PVAATVNCADNTGAK LYIISVKGI GRL RLPSACVGDMVMATVKKGKPDLRKKV+P+VIVRQ KPW RKDGVFMYFEDNAGVIVNPKGEM+GSAITGPIG Sbjct: 21 PVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIG 122 HSP 2 Score: 39.6614 bits (91), Expect = 1.832e-53 Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = -2 Query: 109 LDKECGDLWPRIASAANAIV 168 + KEC DLWPRIASAANAIV Sbjct: 121 IGKECADLWPRIASAANAIV 140
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_TOBAC (60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 1.172e-52 Identity = 92/102 (90.20%), Postives = 96/102 (94.12%), Query Frame = -1 Query: 164 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPIG 469 PVAAT+NCADNTGAK LYIISVKGI GRL RLPSACVGDMVMATVKKGKPDLRKKVMP+V+VRQ KPW RKDGVFMYFEDNAGVIVN KGEM+GSAITGPIG Sbjct: 21 PVAATINCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGPIG 122 HSP 2 Score: 39.6614 bits (91), Expect = 1.172e-52 Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = -2 Query: 109 LDKECGDLWPRIASAANAIV 168 + KEC DLWPRIASAANAIV Sbjct: 121 IGKECADLWPRIASAANAIV 140
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_TORRU (60S ribosomal protein L23 OS=Tortula ruralis GN=RPL23 PE=2 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 1.044e-47 Identity = 86/102 (84.31%), Postives = 90/102 (88.24%), Query Frame = -1 Query: 164 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPIG 469 PV A VNCADNTGAK LY+IS G+ GRL RLP+A VGDMVMATVKKGKPDLRKKVMP+VIVRQ KPW RKDGVFMYFEDNAGVIVNPKGEM SAITGPIG Sbjct: 21 PVGAVVNCADNTGAKNLYVIS-SGVRGRLNRLPAAAVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNPSAITGPIG 121 HSP 2 Score: 39.6614 bits (91), Expect = 1.044e-47 Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = -2 Query: 109 LDKECGDLWPRIASAANAIV 168 + KEC DLWPRIASAANAIV Sbjct: 120 IGKECADLWPRIASAANAIV 139
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_DANRE (60S ribosomal protein L23 OS=Danio rerio GN=rpl23 PE=2 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 2.455e-43 Identity = 81/101 (80.20%), Postives = 90/101 (89.11%), Query Frame = -1 Query: 167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469 PV A +NCADNTGAK LYIISVKGI GRL RLPSA VGDMVMATVKKGKP+LRKKV P+V++RQ K + RKDGVF+YFEDNAGVIVN KGEM+GSAITGP+ Sbjct: 21 PVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPV 121 HSP 2 Score: 31.9574 bits (71), Expect = 2.455e-43 Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = -2 Query: 112 KECGDLWPRIASAANAI 162 KEC DLWPRIAS A +I Sbjct: 123 KECADLWPRIASNAGSI 139
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_RAT (60S ribosomal protein L23 OS=Rattus norvegicus GN=Rpl23 PE=2 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 5.434e-43 Identity = 80/101 (79.21%), Postives = 90/101 (89.11%), Query Frame = -1 Query: 167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469 PV A +NCADNTGAK LYIISVKGI GRL RLP+A VGDMVMATVKKGKP+LRKKV P+V++RQ K + RKDGVF+YFEDNAGVIVN KGEM+GSAITGP+ Sbjct: 21 PVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPV 121 HSP 2 Score: 31.9574 bits (71), Expect = 5.434e-43 Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = -2 Query: 112 KECGDLWPRIASAANAI 162 KEC DLWPRIAS A +I Sbjct: 123 KECADLWPRIASNAGSI 139
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_PIG (60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 PE=2 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 5.434e-43 Identity = 80/101 (79.21%), Postives = 90/101 (89.11%), Query Frame = -1 Query: 167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469 PV A +NCADNTGAK LYIISVKGI GRL RLP+A VGDMVMATVKKGKP+LRKKV P+V++RQ K + RKDGVF+YFEDNAGVIVN KGEM+GSAITGP+ Sbjct: 21 PVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPV 121 HSP 2 Score: 31.9574 bits (71), Expect = 5.434e-43 Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = -2 Query: 112 KECGDLWPRIASAANAI 162 KEC DLWPRIAS A +I Sbjct: 123 KECADLWPRIASNAGSI 139
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_MOUSE (60S ribosomal protein L23 OS=Mus musculus GN=Rpl23 PE=2 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 5.434e-43 Identity = 80/101 (79.21%), Postives = 90/101 (89.11%), Query Frame = -1 Query: 167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469 PV A +NCADNTGAK LYIISVKGI GRL RLP+A VGDMVMATVKKGKP+LRKKV P+V++RQ K + RKDGVF+YFEDNAGVIVN KGEM+GSAITGP+ Sbjct: 21 PVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPV 121 HSP 2 Score: 31.9574 bits (71), Expect = 5.434e-43 Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = -2 Query: 112 KECGDLWPRIASAANAI 162 KEC DLWPRIAS A +I Sbjct: 123 KECADLWPRIASNAGSI 139
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_ICTPU (60S ribosomal protein L23 OS=Ictalurus punctatus GN=rpl23 PE=2 SV=2) HSP 1 Score: 163.696 bits (413), Expect = 5.434e-43 Identity = 80/101 (79.21%), Postives = 90/101 (89.11%), Query Frame = -1 Query: 167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469 PV A +NCADNTGAK LYIISVKGI GRL RLP+A VGDMVMATVKKGKP+LRKKV P+V++RQ K + RKDGVF+YFEDNAGVIVN KGEM+GSAITGP+ Sbjct: 21 PVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPV 121 HSP 2 Score: 31.9574 bits (71), Expect = 5.434e-43 Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = -2 Query: 112 KECGDLWPRIASAANAI 162 KEC DLWPRIAS A +I Sbjct: 123 KECADLWPRIASNAGSI 139
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_HUMAN (60S ribosomal protein L23 OS=Homo sapiens GN=RPL23 PE=1 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 5.434e-43 Identity = 80/101 (79.21%), Postives = 90/101 (89.11%), Query Frame = -1 Query: 167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469 PV A +NCADNTGAK LYIISVKGI GRL RLP+A VGDMVMATVKKGKP+LRKKV P+V++RQ K + RKDGVF+YFEDNAGVIVN KGEM+GSAITGP+ Sbjct: 21 PVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPV 121 HSP 2 Score: 31.9574 bits (71), Expect = 5.434e-43 Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = -2 Query: 112 KECGDLWPRIASAANAI 162 KEC DLWPRIAS A +I Sbjct: 123 KECADLWPRIASNAGSI 139
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_BOVIN (60S ribosomal protein L23 OS=Bos taurus GN=RPL23 PE=2 SV=2) HSP 1 Score: 163.696 bits (413), Expect = 5.434e-43 Identity = 80/101 (79.21%), Postives = 90/101 (89.11%), Query Frame = -1 Query: 167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469 PV A +NCADNTGAK LYIISVKGI GRL RLP+A VGDMVMATVKKGKP+LRKKV P+V++RQ K + RKDGVF+YFEDNAGVIVN KGEM+GSAITGP+ Sbjct: 21 PVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPV 121 HSP 2 Score: 31.9574 bits (71), Expect = 5.434e-43 Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = -2 Query: 112 KECGDLWPRIASAANAI 162 KEC DLWPRIAS A +I Sbjct: 123 KECADLWPRIASNAGSI 139 The following BLAST results are available for this feature:
BLAST of CF831977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 117
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Sequences
The
following sequences are available for this feature:
EST sequence >CF831977 ID=CF831977; Name=CF831977; organism=Citrus sinensis; type=EST; length=469bpback to top |