CF832234
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: R35A3_ARATH (60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=2 SV=1) HSP 1 Score: 212.616 bits (540), Expect = 1.347e-54 Identity = 101/112 (90.18%), Postives = 105/112 (93.75%), Query Frame = -2 Query: 233 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAKVKKNGSPYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 568 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSL+QIEGVN +E+V+WY GKRMAYIYKAK KKNGS YRCIWGKV RPHGNSGVVRAKF SNLPPKSMG RVRVFMYPSNI Sbjct: 1 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: R35A1_ARATH (60S ribosomal protein L35a-1 OS=Arabidopsis thaliana GN=RPL35AA PE=3 SV=1) HSP 1 Score: 212.616 bits (540), Expect = 1.347e-54 Identity = 101/112 (90.18%), Postives = 104/112 (92.86%), Query Frame = -2 Query: 233 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAKVKKNGSPYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 568 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSL+Q+EGVN E+VSWY GKRMAYIYKAK KKNGS YRCIWGKV RPHGNSGVVRAKF SNLPPKSMG RVRVFMYPSNI Sbjct: 1 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: R35A2_ARATH (60S ribosomal protein L35a-2 OS=Arabidopsis thaliana GN=RPL35AB PE=3 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 9.652e-53 Identity = 97/111 (87.39%), Postives = 104/111 (93.69%), Query Frame = -2 Query: 233 VKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAKVKKNGSPYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 565 +KGRQGERVRLYVRGT+LGYKRSKSNQYPNTSLIQIEGVN +E+V+WY GKR+AYIYKAK KKNGS YRCIWGKV RPHGNSGVVR+KF SNLPPKSMG RVRVFMYPSNI Sbjct: 1 MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: R35A4_ARATH (60S ribosomal protein L35a-4 OS=Arabidopsis thaliana GN=RPL35AD PE=3 SV=2) HSP 1 Score: 206.068 bits (523), Expect = 1.261e-52 Identity = 96/111 (86.49%), Postives = 104/111 (93.69%), Query Frame = -2 Query: 233 VKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAKVKKNGSPYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 565 +KGRQGERVRLYVRGT+LGYKRSKSNQYPNTSL+QIEGVN +E+V+WY GKR+AYIYKAK KKNGS YRCIWGKV RPHGNSGVVR+KF SNLPPKSMG RVRVFMYPSNI Sbjct: 1 MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL33A_YEAST (60S ribosomal protein L33-A OS=Saccharomyces cerevisiae GN=RPL33A PE=1 SV=3) HSP 1 Score: 125.176 bits (313), Expect = 2.828e-28 Identity = 60/105 (57.14%), Postives = 75/105 (71.43%), Query Frame = -2 Query: 233 ERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAKVKKNGSPYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 547 E RLYV+G L Y+RSK PN SLI+IEGV +D +Y GKR+AY+Y+A + GS R +WGKV R HGNSGVVRA F++NLP K+ G VR+F+YPSNI Sbjct: 3 ESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQDAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL33B_YEAST (60S ribosomal protein L33-B OS=Saccharomyces cerevisiae GN=RPL33B PE=1 SV=2) HSP 1 Score: 123.635 bits (309), Expect = 8.228e-28 Identity = 59/105 (56.19%), Postives = 75/105 (71.43%), Query Frame = -2 Query: 233 ERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAKVKKNGSPYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 547 E RLYV+G L Y+RSK PN SLI+IEGV ++ +Y GKR+AY+Y+A + GS R +WGKV R HGNSGVVRA F++NLP K+ G VR+F+YPSNI Sbjct: 3 ESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQEAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL33A_SCHPO (60S ribosomal protein L33-A OS=Schizosaccharomyces pombe GN=rpl33a PE=2 SV=2) HSP 1 Score: 119.013 bits (297), Expect = 2.027e-26 Identity = 54/102 (52.94%), Postives = 73/102 (71.57%), Query Frame = -2 Query: 233 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAKVKKNGSPYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 538 RLYV+ L ++RSK +P TSL++IEG + KE+ +Y GKR+ ++YK+ GS R IWG V+RPHGNSGVVRA+F NLPPK+ G +RV +YPSN+ Sbjct: 7 RLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNKPVRGSKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTFGASLRVMLYPSNV 108
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL33B_SCHPO (60S ribosomal protein L33-B OS=Schizosaccharomyces pombe GN=rpl33b PE=1 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.006e-25 Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = -2 Query: 233 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAKVKKNGSPYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 538 RLYV+ L ++RSK +P TS+++IEG + KE+ +Y GKR+ Y+YK+ GS R IWG +ARPHGNSG VRA+F NLP K+ G +RV +YPSNI Sbjct: 7 RLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAVRGSKIRVIWGTIARPHGNSGAVRARFVHNLPAKTFGSSLRVMLYPSNI 108
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL35A_XENLA (60S ribosomal protein L35a OS=Xenopus laevis GN=rpl35a PE=3 SV=2) HSP 1 Score: 116.316 bits (290), Expect = 1.314e-25 Identity = 58/107 (54.21%), Postives = 75/107 (70.09%), Query Frame = -2 Query: 233 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAK---VKKNGSPYRC--IWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 538 RL+ + T GYKR NQ +T+L++IEGV +++ +Y GKR AY+YKAK V G P R IWGKV R HGNSG+VRAKF+SNLP K++G R+RV +YPS I Sbjct: 4 RLWCKATFAGYKRGLRNQREHTALLKIEGVYARDETEFYFGKRCAYVYKAKNNTVTPGGKPNRTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL35A_ICTPU (60S ribosomal protein L35a OS=Ictalurus punctatus GN=rpl35a PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.314e-25 Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = -2 Query: 233 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAK---VKKNGSPY--RCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 538 RL+ + GYKR NQ +T+L+++EGV + +V +Y GKR AY+YKAK V G P R IWGKV R HGNSG+VRAKF SNLPPK++G R+RV +YPS + Sbjct: 4 RLWCKAIFAGYKRGLRNQREHTALLKVEGVYSRNEVDFYLGKRCAYVYKAKKTTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFTSNLPPKAIGHRIRVMLYPSRV 110 The following BLAST results are available for this feature:
BLAST of CF832234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832234 ID=CF832234; Name=CF832234; organism=Citrus sinensis; type=EST; length=635bpback to top |