CF832332

Overview
NameCF832332
Unique NameCF832332
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length377
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 3.059e-44
Identity = 85/112 (75.89%), Postives = 95/112 (84.82%), Query Frame = 2
Query:   41 PPRYNVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            P +  V LF RW+F DVQ++D+ L DYIGV  +KHATYVPHTAGRYS+KRF KAQCPIVERLTNSLMMHGRNNG KLMAV I+ HA+EIIHLLTD NPIQVI DAV+N GPR
Sbjct:    4 PTQIEVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPR 115          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 1.518e-43
Identity = 89/125 (71.20%), Postives = 99/125 (79.20%), Query Frame = 2
Query:    2 MATAVLALSQDPSPPRYNVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            MATA    ++        V LF RWT+ DV V DI L DYIGV+AAKHAT+VPHTAGRYS+KRF KAQCPIVERLTNSLMMHGRNNG KLMAV IV HA+EIIHLL+D NPIQVI DA++N GPR
Sbjct:    1 MATAADVDAEIQQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPR 125          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.192e-42
Identity = 83/107 (77.57%), Postives = 92/107 (85.98%), Query Frame = 2
Query:   56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            V LF RW+F DV V DI L DYIGV+ +KHAT+VPHTAGRYS+KRF KAQCPIVERLTNSLMMHGRNNG KLMAV IV HA+EIIHLL+D NPIQVI DA++N GPR
Sbjct:   19 VKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPR 125          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 151.369 bits (381), Expect = 1.376e-36
Identity = 76/123 (61.79%), Postives = 94/123 (76.42%), Query Frame = 2
Query:    8 TAVLALSQDPSPPRYNVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            TA  A+++ P     ++ LF +W+  DVQ+NDI L DYI V+  K+A Y+PH+AGRY+ KRF KAQCPIVERLTNS+MMHGRNNG KLM V IV HA EIIHLLT  NP+QV+ +A+IN GPR
Sbjct:    6 TAAPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPR 122          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 1.376e-36
Identity = 76/123 (61.79%), Postives = 94/123 (76.42%), Query Frame = 2
Query:    8 TAVLALSQDPSPPRYNVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            TA  A+++ P     ++ LF +W+  DVQ+NDI L DYI V+  K+A Y+PH+AGRY+ KRF KAQCPIVERLTNS+MMHGRNNG KLM V IV HA EIIHLLT  NP+QV+ +A+IN GPR
Sbjct:    6 TAAPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPR 122          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5_MOUSE (40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 4.004e-36
Identity = 72/108 (66.67%), Postives = 87/108 (80.56%), Query Frame = 2
Query:   53 NVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            ++ LF +W+  DVQ+NDI L DYI V+  K+A Y+PH+AGRY+ KRF KAQCPIVERLTNS+MMHGRNNG KLM V IV HA EIIHLLT  NP+QV+ +A+IN GPR
Sbjct:   16 DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPR 122          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5_NEUCR (40S ribosomal protein S5 OS=Neurospora crassa GN=rps-5 PE=3 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 1.522e-35
Identity = 70/108 (64.81%), Postives = 86/108 (79.63%), Query Frame = 2
Query:   53 NVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            +V LF RW+++DV++ DI L DYI +R+     Y+PH+AGRY+ KRF KA CPI+ERLTNSLMMHGRNNG KLMAV IV HA EIIHL+TD NPIQ+  DA++N GPR
Sbjct:   27 SVKLFNRWSYEDVEIRDISLTDYIQIRSP---VYLPHSAGRYAAKRFRKANCPIIERLTNSLMMHGRNNGKKLMAVRIVAHAFEIIHLMTDQNPIQIAVDAIVNCGPR 131          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5_RAT (40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 3.390e-35
Identity = 74/123 (60.16%), Postives = 92/123 (74.80%), Query Frame = 2
Query:    8 TAVLALSQDPSPPRYNVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            TA  A+++ P     ++ LF +W+  DVQ+NDI L DYI V+  K+A Y+PH+AGRY+   F KAQCPIVERLTNS+MMHGRNNG KLM V IV HA EIIHLLT  NP+QV+ +A+IN GPR
Sbjct:    6 TATPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAANGFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPR 122          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5_PODCA (40S ribosomal protein S5 OS=Podocoryne carnea GN=RPS5 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.424e-33
Identity = 66/108 (61.11%), Postives = 84/108 (77.78%), Query Frame = 2
Query:   53 NVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            ++ LF +W  + + ++DI L DYI V+   HA Y+PHTA RY++KRF KAQCPIVERLTNSLMMHGRNNG KLMAV IV H+ EI+HLLT  NP+Q++ +A+ N GPR
Sbjct:   22 DIKLFGKWPLEGLNISDISLTDYIAVKD-NHAVYLPHTAARYAVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGPR 128          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5A_DROME (40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.068e-33
Identity = 70/107 (65.42%), Postives = 81/107 (75.70%), Query Frame = 2
Query:   56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            + LF RW+  DV VNDI L DYI V+  K A Y+PH+AGRY+ KRF KAQCPIVERLT SLMM GRNNG KLMA  IV H+ EIIHLLT  NP+Q++  A+IN GPR
Sbjct:   41 IKLFGRWSCDDVTVNDISLQDYISVKE-KFARYLPHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPR 146          
The following BLAST results are available for this feature:
BLAST of CF832332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RS5_CICAR3.059e-4475.8940S ribosomal protein S5 (Fragment) OS=Cicer ariet... [more]
RS52_ARATH1.518e-4371.2040S ribosomal protein S5-2 OS=Arabidopsis thaliana... [more]
RS51_ARATH2.192e-4277.5740S ribosomal protein S5-1 OS=Arabidopsis thaliana... [more]
RS5_HUMAN1.376e-3661.7940S ribosomal protein S5 OS=Homo sapiens GN=RPS5 P... [more]
RS5_BOVIN1.376e-3661.7940S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=... [more]
RS5_MOUSE4.004e-3666.6740S ribosomal protein S5 OS=Mus musculus GN=Rps5 P... [more]
RS5_NEUCR1.522e-3564.8140S ribosomal protein S5 OS=Neurospora crassa GN=r... [more]
RS5_RAT3.390e-3560.1640S ribosomal protein S5 OS=Rattus norvegicus GN=R... [more]
RS5_PODCA1.424e-3361.1140S ribosomal protein S5 OS=Podocoryne carnea GN=R... [more]
RS5A_DROME7.068e-3365.4240S ribosomal protein S5a OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832332 ID=CF832332; Name=CF832332; organism=Citrus sinensis; type=EST; length=377bp
AATGGCGACTGCTGTACTGGCACTGTCTCAAGACCCATCGCCCCCTCGCT
ACAATGTGAACCTCTTCATTAGGTGGACTTTCAAGGATGTTCAGGTCAAT
GACATCTAGTTGAATGATTATATTGGCGTGCGAGCGGCCAAGCACGCTAC
TTATGTGCCTCACACTGCTGGGAGGTACTCTATTAAGCGTTTCCCGAAGG
CCCAATGTCCCATTGTTGAGAGGCTTACGAACTCTCTTATGATGCACGGT
CGAAACAACGGCTACAAATTGATGGCTGTCACGATTGTTAACCATGCCTT
GGAGATCATTCACCTTTTGACCGACCACAACCCAATTCAAGTCATTGGTG
ATGCTGTCATCAACAGGGGTCCAAGGG
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