CF832332
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 3.059e-44 Identity = 85/112 (75.89%), Postives = 95/112 (84.82%), Query Frame = 2 Query: 41 PPRYNVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376 P + V LF RW+F DVQ++D+ L DYIGV +KHATYVPHTAGRYS+KRF KAQCPIVERLTNSLMMHGRNNG KLMAV I+ HA+EIIHLLTD NPIQVI DAV+N GPR Sbjct: 4 PTQIEVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPR 115
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2) HSP 1 Score: 174.481 bits (441), Expect = 1.518e-43 Identity = 89/125 (71.20%), Postives = 99/125 (79.20%), Query Frame = 2 Query: 2 MATAVLALSQDPSPPRYNVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376 MATA ++ V LF RWT+ DV V DI L DYIGV+AAKHAT+VPHTAGRYS+KRF KAQCPIVERLTNSLMMHGRNNG KLMAV IV HA+EIIHLL+D NPIQVI DA++N GPR Sbjct: 1 MATAADVDAEIQQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPR 125
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 2.192e-42 Identity = 83/107 (77.57%), Postives = 92/107 (85.98%), Query Frame = 2 Query: 56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376 V LF RW+F DV V DI L DYIGV+ +KHAT+VPHTAGRYS+KRF KAQCPIVERLTNSLMMHGRNNG KLMAV IV HA+EIIHLL+D NPIQVI DA++N GPR Sbjct: 19 VKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPR 125
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4) HSP 1 Score: 151.369 bits (381), Expect = 1.376e-36 Identity = 76/123 (61.79%), Postives = 94/123 (76.42%), Query Frame = 2 Query: 8 TAVLALSQDPSPPRYNVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376 TA A+++ P ++ LF +W+ DVQ+NDI L DYI V+ K+A Y+PH+AGRY+ KRF KAQCPIVERLTNS+MMHGRNNG KLM V IV HA EIIHLLT NP+QV+ +A+IN GPR Sbjct: 6 TAAPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPR 122
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3) HSP 1 Score: 151.369 bits (381), Expect = 1.376e-36 Identity = 76/123 (61.79%), Postives = 94/123 (76.42%), Query Frame = 2 Query: 8 TAVLALSQDPSPPRYNVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376 TA A+++ P ++ LF +W+ DVQ+NDI L DYI V+ K+A Y+PH+AGRY+ KRF KAQCPIVERLTNS+MMHGRNNG KLM V IV HA EIIHLLT NP+QV+ +A+IN GPR Sbjct: 6 TAAPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPR 122
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5_MOUSE (40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3) HSP 1 Score: 149.828 bits (377), Expect = 4.004e-36 Identity = 72/108 (66.67%), Postives = 87/108 (80.56%), Query Frame = 2 Query: 53 NVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376 ++ LF +W+ DVQ+NDI L DYI V+ K+A Y+PH+AGRY+ KRF KAQCPIVERLTNS+MMHGRNNG KLM V IV HA EIIHLLT NP+QV+ +A+IN GPR Sbjct: 16 DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPR 122
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5_NEUCR (40S ribosomal protein S5 OS=Neurospora crassa GN=rps-5 PE=3 SV=2) HSP 1 Score: 147.902 bits (372), Expect = 1.522e-35 Identity = 70/108 (64.81%), Postives = 86/108 (79.63%), Query Frame = 2 Query: 53 NVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376 +V LF RW+++DV++ DI L DYI +R+ Y+PH+AGRY+ KRF KA CPI+ERLTNSLMMHGRNNG KLMAV IV HA EIIHL+TD NPIQ+ DA++N GPR Sbjct: 27 SVKLFNRWSYEDVEIRDISLTDYIQIRSP---VYLPHSAGRYAAKRFRKANCPIIERLTNSLMMHGRNNGKKLMAVRIVAHAFEIIHLMTDQNPIQIAVDAIVNCGPR 131
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5_RAT (40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=2 SV=3) HSP 1 Score: 146.747 bits (369), Expect = 3.390e-35 Identity = 74/123 (60.16%), Postives = 92/123 (74.80%), Query Frame = 2 Query: 8 TAVLALSQDPSPPRYNVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376 TA A+++ P ++ LF +W+ DVQ+NDI L DYI V+ K+A Y+PH+AGRY+ F KAQCPIVERLTNS+MMHGRNNG KLM V IV HA EIIHLLT NP+QV+ +A+IN GPR Sbjct: 6 TATPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAANGFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPR 122
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5_PODCA (40S ribosomal protein S5 OS=Podocoryne carnea GN=RPS5 PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 1.424e-33 Identity = 66/108 (61.11%), Postives = 84/108 (77.78%), Query Frame = 2 Query: 53 NVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376 ++ LF +W + + ++DI L DYI V+ HA Y+PHTA RY++KRF KAQCPIVERLTNSLMMHGRNNG KLMAV IV H+ EI+HLLT NP+Q++ +A+ N GPR Sbjct: 22 DIKLFGKWPLEGLNISDISLTDYIAVKD-NHAVYLPHTAARYAVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGPR 128
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5A_DROME (40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=1 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 7.068e-33 Identity = 70/107 (65.42%), Postives = 81/107 (75.70%), Query Frame = 2 Query: 56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376 + LF RW+ DV VNDI L DYI V+ K A Y+PH+AGRY+ KRF KAQCPIVERLT SLMM GRNNG KLMA IV H+ EIIHLLT NP+Q++ A+IN GPR Sbjct: 41 IKLFGRWSCDDVTVNDISLQDYISVKE-KFARYLPHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPR 146 The following BLAST results are available for this feature:
BLAST of CF832332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832332 ID=CF832332; Name=CF832332; organism=Citrus sinensis; type=EST; length=377bpback to top |