CF832478
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: HDA2_ARATH (Histone deacetylase 2 OS=Arabidopsis thaliana GN=HDA2 PE=1 SV=2) HSP 1 Score: 399.823 bits (1026), Expect = 8.103e-111 Identity = 192/244 (78.69%), Postives = 216/244 (88.52%), Query Frame = 2 Query: 20 LIYSPDYNISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDI 751 +IYS Y+ISF+GIEKLHPFDSSKWGR+C+FL S+GFL++ IVEPLEASK DLLVVHSE+YL SL+SS V+ I EV PVA FPN LVQ+KVLYPFRKQVGGTILAAKLA ERGWAIN+GGGFHHC+A+ GGGFCA+ADISLCIH+AF++L ISRVMIIDLDAHQGNGHE D D+RVYILDM+NP IYP DY ARRFIDQKVEV+SGTTT+EYL+KLDEALEVA F PELVIYNAGTDI Sbjct: 76 IIYSSSYDISFMGIEKLHPFDSSKWGRVCKFLVSDGFLEEKAIVEPLEASKIDLLVVHSENYLNSLKSSATVARITEVAPVAFFPNFLVQQKVLYPFRKQVGGTILAAKLATERGWAINIGGGFHHCTAERGGGFCAFADISLCIHFAFLRLRISRVMIIDLDAHQGNGHETDLGDDNRVYILDMYNPEIYPFDYRARRFIDQKVEVMSGTTTDEYLRKLDEALEVASRNFQPELVIYNAGTDI 319
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: HDA11_MACFA (Histone deacetylase 11 OS=Macaca fascicularis GN=HDAC11 PE=2 SV=2) HSP 1 Score: 297.745 bits (761), Expect = 4.337e-80 Identity = 145/246 (58.94%), Postives = 182/246 (73.98%), Query Frame = 2 Query: 17 PLIYSPDYNISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQL-NISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDI 751 P++YSP YNI+F+G+EKLHPFD+ KWG++ FL E L + +VE EAS+EDLLVVH+ YL L+ S V+ I E+PPV PN LVQRKVL P R Q GGTI+A KLA ERGWAINVGGGFHHCS+D GGGFCAYADI+L I + F ++ ISR IIDLDAHQGNGHE+DF D RVYI+D++N IYP D A++ I +KVE+ GT +EYL K++ +E + P++V+YNAGTDI Sbjct: 17 PIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSMLVEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIEKSLQEHLPDVVVYNAGTDI 262
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: HDA11_HUMAN (Histone deacetylase 11 OS=Homo sapiens GN=HDAC11 PE=1 SV=1) HSP 1 Score: 296.204 bits (757), Expect = 1.262e-79 Identity = 144/246 (58.54%), Postives = 182/246 (73.98%), Query Frame = 2 Query: 17 PLIYSPDYNISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQL-NISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDI 751 P++YSP YNI+F+G+EKLHPFD+ KWG++ FL E L + +VE EAS+EDLLVVH+ YL L+ S V+ I E+PPV PN LVQRKVL P R Q GGTI+A KLA ERGWAINVGGGFHHCS+D GGGFCAYADI+L I + F ++ ISR IIDLDAHQGNGHE+DF D RVYI+D++N IYP D A++ I +KVE+ GT +EYL K++ ++ + P++V+YNAGTDI Sbjct: 17 PIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSMLVEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIKKSLQEHLPDVVVYNAGTDI 262
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: HDA11_MOUSE (Histone deacetylase 11 OS=Mus musculus GN=Hdac11 PE=2 SV=1) HSP 1 Score: 293.893 bits (751), Expect = 6.262e-79 Identity = 143/246 (58.13%), Postives = 179/246 (72.76%), Query Frame = 2 Query: 17 PLIYSPDYNISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQL-NISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDI 751 P++YSP YNI+F+G+EKLHPFD+ KWG++ FL E L +VE EAS+EDLLVVH+ YL L+ S V+ I E+PPV PN LVQRKVL P R Q GGTI+A KLA ERGWAINVGGGFHHCS+D GGGFCAYADI+L I + F ++ ISR IIDLDAHQGNGHE+DF D RVYI+D++N IYP D A+ I +KVE+ GT EYL+K++ + + P++V+YNAGTD+ Sbjct: 17 PIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDGMLVEAREASEEDLLVVHTRRYLNELKWSFVVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAHQGNGHERDFMGDKRVYIMDVYNRHIYPGDRFAKEAIRRKVELEWGTEDEEYLEKVERNVRRSLQEHLPDVVVYNAGTDV 262
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: Y1628_SYNP2 (Uncharacterized protein SYNPCC7002_A1628 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=SYNPCC7002_A1628 PE=3 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 2.767e-18 Identity = 73/247 (29.55%), Postives = 109/247 (44.13%), Query Frame = 2 Query: 17 PLIYSPDYNISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQS---SPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTD 748 P++Y PDY I + H F K+ + L +G + + +P + L +VH Y+ + +P I +P A +VQR + VGGTIL A+LA E G A N GG HH G GFC D+++ + R++I+DLD HQG+G F D V+ M +P ++ D + + G + YL+ L LE P+LV Y+AG D Sbjct: 4 PVVYHPDY---VTPIPEEHRFPMPKFRLLHGLLLEDGVIQPEQVYQPQLPDRAWLELVHEPDYVTAYCQGTLTPKAQRRIGLPWSA----GVVQRTLT-----AVGGTILTAQLALEHGLACNTAGGTHHAFPGYGSGFCILNDLAIATRTIQQRGLAQRILIVDLDVHQGDGTAFIFQDDPTVFTFSMHCEVNFP---SQKQRSDLDLGLPEGLDDDGYLQILAHHLEDLLSQVKPDLVFYDAGVD 235
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: HDAC8_XENTR (Histone deacetylase 8 OS=Xenopus tropicalis GN=hdac8 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.518e-16 Identity = 66/226 (29.20%), Postives = 104/226 (46.02%), Query Frame = 2 Query: 113 LSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAK---LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTD 748 + + G L + +V+P AS E++ H++SYL+ L S + E L +C + + Y + VGG L A +A + AIN GG+HH DE GFC D L I ++ RV+ +D+D H G+G E FS S+V + + F+PG +P + R+ V + G +Y + + L+ TF+PE V+ G D Sbjct: 37 IEAYGLLKEMRVVKPKVASMEEMAAFHTDSYLQHLHKVSEEGDNDDPETLEYGLGYDCPITEGI-YDYAAAVGGATLTAAEQLMAGKTRIAINWPGGWHHAKKDEASGFCYLNDAVLGI--LKLREKFDRVLYVDMDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDIGLGKGRYYSVNVPLQDGIQDEKYYQICEGVLKEVFTTFNPEAVVLQLGAD 259
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: HDAC8_XENLA (Histone deacetylase 8 OS=Xenopus laevis GN=hdac8 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 8.332e-15 Identity = 62/215 (28.84%), Postives = 98/215 (45.58%), Query Frame = 2 Query: 146 IVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTD 748 +V+P AS E++ H+++YL+ L S + E L +C + + Y + VGG L A G A+N GG+HH DE GFC D L I ++ RV+ +D+D H G+G E FS S+V + + F+PG +P + R+ V + G ++Y + + L+ TF+PE V+ G D Sbjct: 4 VVKPKVASMEEMAAFHTDAYLQHLHKVSEEGDNDDPETLEYGLGYDCPITEGI-YDYAAAVGGATLTAAEQLIEGKTRIAVNWPGGWHHAKKDEASGFCYLNDAVLGI--LKLREKFDRVLYVDMDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDIGLGKGRYYSINVPLQDGIQDDKYYQICEGVLKEVFTTFNPEAVVLQLGAD 215
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: HDAC8_HUMAN (Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=1 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.424e-14 Identity = 65/256 (25.39%), Postives = 109/256 (42.58%), Query Frame = 2 Query: 23 IYSPDYNISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTD 748 IYSP+Y + K+ + + + + + IV+P AS E++ H+++YL+ LQ S + L +C + + + +GG + A G AIN GG+HH DE GFC D L I ++ R++ +DLD H G+G E FS S+V + + F+PG +P + R+ V + G +Y + + L+ F+P+ V+ G D Sbjct: 19 IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGI-FDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGAD 267
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: Y130_ARCFU (Uncharacterized protein AF_0130 OS=Archaeoglobus fulgidus GN=AF_0130 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.166e-14 Identity = 66/242 (27.27%), Postives = 103/242 (42.56%), Query Frame = 2 Query: 71 HPFDSSKWGRICQFLSSEGFLDKNCIV--EPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVP---PVALFPNCLVQRKVLYPFRKQVGGTILAAKLAK----ERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQK-------VEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTD 748 HP + L EG + IV EP +AS ED+L VH+E Y++ L+ II+ PV +F L+ GG I AA+ E +A+ G HH G GFC ++++ + + Q R+ I+D DAH G+G ++ F +D RV + +YP K + + GT Y+ +DE +E + F P+ + +AG D Sbjct: 20 HPERRERLAYTMDQLREEGIFESERIVLLEPFKASLEDVLEVHTEEYVRFLEMESKKGGIIDFDTNIPVGVFDRALLA----------AGGAIRAAQAVLNKECENAFAMIRPPG-HHAKPYIGAGFCYLNNMAIMVKWLLKQ-GFERIAILDWDAHHGDGTQEIFYNDDRVLFISTHQMPLYPGTGYPEECGTGKGEGYTVNIPLPPGTGDEGYMMVIDEIIEPVVNEFKPQFIAISAGQD 249
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: HDAC8_RAT (Histone deacetylase 8 OS=Rattus norvegicus GN=Hdac8 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.166e-14 Identity = 69/260 (26.54%), Postives = 110/260 (42.31%), Query Frame = 2 Query: 8 LPLPLIYSPDYNISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGW--AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTD 748 LP IYSP+Y + K+ + + + + + IV+P AS E++ H+++YL+ LQ S + L +C + GGTI AA+ + AIN GG+HH DE GFC D L I ++ R++ +DLD H G+G E FS S+V + + F+PG +P + R+ V + G +Y + L+ F+P+ V+ G D Sbjct: 14 LPPVYIYSPEYVSICDSLVKV----PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSIEYGLGYDCPATEGIFDYAAAIGGGTITAAQCLIDGKCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFDRILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDMSDVGLGKGRYYSVNVPIQDGIQDEKYYHICESVLKEVYQAFNPKAVVLQLGAD 267 The following BLAST results are available for this feature:
BLAST of CF832478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832478 ID=CF832478; Name=CF832478; organism=Citrus sinensis; type=EST; length=753bpback to top |