CF834772

Overview
NameCF834772
Unique NameCF834772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6272 contig Csv1_Contig6272:416..1001. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834772 vs. ExPASy Swiss-Prot
Match: PRX2E_ARATH (Peroxiredoxin-2E, chloroplastic OS=Arabidopsis thaliana GN=PRXIIE PE=1 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 6.221e-53
Identity = 101/129 (78.29%), Postives = 116/129 (89.92%), Query Frame = -3
Query:  194 KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRACQENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEAMLKAL 580
            KK ILFAVPGAFTPTCSQKH+PGFV K+ EL+SKG+D++ACISVNDAFVM A +++LGINDEV+LLSDGNG FT  +G ELDL DKP+GLGVRSRRYA+LA++GVVKVLNLEEGGAFT S AE MLKAL
Sbjct:  106 KKTILFAVPGAFTPTCSQKHVPGFVSKAGELRSKGIDVIACISVNDAFVMEAWRKDLGINDEVMLLSDGNGEFTGKLGVELDLRDKPVGLGVRSRRYAILADDGVVKVLNLEEGGAFTNSSAEDMLKAL 234          
BLAST of CF834772 vs. ExPASy Swiss-Prot
Match: PR2E1_ORYSJ (Peroxiredoxin-2E-1, chloroplastic OS=Oryza sativa subsp. japonica GN=PRXIIE-1 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 6.221e-53
Identity = 102/129 (79.07%), Postives = 115/129 (89.15%), Query Frame = -3
Query:  194 KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRACQENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEAMLKAL 580
            KK +LFAVPGAFTPTC+QKH+PGFV K+ EL++KGVD VAC+SVNDAFVMRA +E+LG+ DEVLLLSDGNG   +A+G ELDLSDKP GLGVRSRRYALLAE+GVVKVLNLEEGGAFT S AE MLKAL
Sbjct:  104 KKVVLFAVPGAFTPTCTQKHVPGFVAKAGELRAKGVDAVACVSVNDAFVMRAWKESLGVGDEVLLLSDGNGELARAMGVELDLSDKPAGLGVRSRRYALLAEDGVVKVLNLEEGGAFTTSSAEEMLKAL 232          
BLAST of CF834772 vs. ExPASy Swiss-Prot
Match: PR2E2_ORYSJ (Peroxiredoxin-2E-2, chloroplastic OS=Oryza sativa subsp. japonica GN=PRXIIE-2 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.173e-51
Identity = 101/130 (77.69%), Postives = 117/130 (90.00%), Query Frame = -3
Query:  194 KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRACQENLGIND-EVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEAMLKAL 580
            +KA+LFAVPGAFTPTCSQKHLPGF+EK+ EL +KGVD +AC+SVNDAFVMRA +E+LG+ D +VLLLSDGN   T+A+G E+DLSDKPMGLGVRSRRYALLA++GVVKVLNLEEGGAFT S AE MLKAL
Sbjct:   96 RKAVLFAVPGAFTPTCSQKHLPGFIEKAGELHAKGVDAIACVSVNDAFVMRAWKESLGLGDADVLLLSDGNLELTRALGVEMDLSDKPMGLGVRSRRYALLADDGVVKVLNLEEGGAFTTSSAEEMLKAL 225          
BLAST of CF834772 vs. ExPASy Swiss-Prot
Match: PRX2C_ORYSJ (Peroxiredoxin-2C OS=Oryza sativa subsp. japonica GN=PRXIIC PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.664e-37
Identity = 77/129 (59.69%), Postives = 99/129 (76.74%), Query Frame = -3
Query:  194 KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRACQENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEAMLKAL 580
            KK +LF VPGAFTPTCS +H+PGF+ ++ +LK+KGVD +  +SVND FVM+A  ++   N  V  L+DG G +TKA+G ELDLS+K  GLG+RSRR+ALLA+N  V V N+EEGG FT SGAE +LKAL
Sbjct:   36 KKVVLFGVPGAFTPTCSNQHVPGFINQAEQLKAKGVDDILLVSVNDPFVMKAWAKSYPENKHVKFLADGLGTYTKALGLELDLSEK--GLGIRSRRFALLADNLKVTVANIEEGGQFTISGAEEILKAL 162          
BLAST of CF834772 vs. ExPASy Swiss-Prot
Match: PRX2B_ARATH (Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.179e-35
Identity = 77/129 (59.69%), Postives = 94/129 (72.87%), Query Frame = -3
Query:  194 KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRACQENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEAMLKAL 580
            KK ILF VPGAFTPTCS KH+PGF+EK+ ELKSKGVD + C SVND FVM+A  +    N  V  ++DG+G +T  +G ELDL DK  GLGVRSRR+ALL ++  V V N+E GG FT S A+ +LKAL
Sbjct:   36 KKVILFGVPGAFTPTCSMKHVPGFIEKAEELKSKGVDEIICFSVNDPFVMKAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDK--GLGVRSRRFALLLDDLKVTVANVESGGEFTVSSADDILKAL 162          
BLAST of CF834772 vs. ExPASy Swiss-Prot
Match: PRX2D_ARATH (Peroxiredoxin-2D OS=Arabidopsis thaliana GN=PRXIID PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 5.850e-35
Identity = 75/129 (58.14%), Postives = 92/129 (71.32%), Query Frame = -3
Query:  194 KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRACQENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEAMLKAL 580
            KK ILF VPGAFTPTCS  H+PGF+ K+ ELKSKG+D + C SVND FVM+A  +    N  V  ++DG+G +T  +G ELDL DK  GLG+RSRR+ALL +N  V V N+E GG FT S AE +LKAL
Sbjct:   36 KKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDPFVMKAWGKTYQENKHVKFVADGSGEYTHLLGLELDLKDK--GLGIRSRRFALLLDNLKVTVANVENGGEFTVSSAEDILKAL 162          
BLAST of CF834772 vs. ExPASy Swiss-Prot
Match: PRX2C_ARATH (Peroxiredoxin-2C OS=Arabidopsis thaliana GN=PRXIIC PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.850e-35
Identity = 75/129 (58.14%), Postives = 92/129 (71.32%), Query Frame = -3
Query:  194 KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRACQENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEAMLKAL 580
            KK ILF VPGAFTPTCS  H+PGF+ K+ ELKSKG+D + C SVND FVM+A  +    N  V  ++DG+G +T  +G ELDL DK  GLG+RSRR+ALL +N  V V N+E GG FT S AE +LKAL
Sbjct:   36 KKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDPFVMKAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDK--GLGIRSRRFALLLDNLKVTVANVESGGEFTVSSAEDILKAL 162          
BLAST of CF834772 vs. ExPASy Swiss-Prot
Match: PRX2A_ARATH (Peroxiredoxin-2A OS=Arabidopsis thaliana GN=PRXIIA PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.168e-25
Identity = 59/115 (51.30%), Postives = 78/115 (67.83%), Query Frame = -3
Query:  236 KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRACQENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGG 580
            KK ILF VPGAF PTCS  H+ GF+EK+ ELKS GVD + C+S +D F++ AC E    N  V  + DG+G + + +G EL++ DK  GLGVRSR +ALL +N  V V+N+  GG
Sbjct:   36 KKVILFGVPGAFPPTCSMNHVNGFIEKAEELKSNGVDEIICLSGDDPFMITACSE----NKHVKFVEDGSGEYIQLLGLELEVKDK--GLGVRSRGFALLLDNLKVIVVNVGSGG 144          
BLAST of CF834772 vs. ExPASy Swiss-Prot
Match: PMP20_LIPKO (Putative peroxisomal peroxiredoxin OS=Lipomyces kononenkoae PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 6.709e-23
Identity = 59/131 (45.04%), Postives = 78/131 (59.54%), Query Frame = -3
Query:  194 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRACQENLGINDEVLLL-SDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEAMLKAL 583
            +K  ++ A+PGAFTPTC+  H+P FVEK   LKS GVD V  +S ND FV  A  + LG+ DE  +  SD    F+K+ G  LDL   P   G R+ RYA++  NGVVK +  +  G    SG +A+L AL
Sbjct:   40 DKTVVIVAIPGAFTPTCTANHIPPFVEKFTALKSAGVDAVIVLSANDPFVQSAFGKALGVTDEAFIFASDPGAEFSKSAGLSLDL---PPAFGTRTARYAIIVSNGVVKYVEKDSEGV-AGSGVDAVLAAL 166          
BLAST of CF834772 vs. ExPASy Swiss-Prot
Match: PRDX5_MOUSE (Peroxiredoxin-5, mitochondrial OS=Mus musculus GN=Prdx5 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 59/130 (45.38%), Postives = 80/130 (61.54%), Query Frame = -3
Query:  194 KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRACQENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE-EGGAFTFSGAEAMLKAL 580
            KK +LF VPGAFTP CS+ HLPGFVE++  LK+KG  +VAC+SVND FV+           +V LL+D  G F KA    LD S   +    R +R++++ +NG+VK LN+E +G   T S A  +L  L
Sbjct:   81 KKGVLFGVPGAFTPGCSKTHLPGFVEQAGALKAKGAQVVACLSVNDVFVIEEWGRAHQAEGKVRLLADPTGAFGKATDLLLDDSLVSLFGNRRLKRFSMVIDNGIVKALNVEPDGTGLTCSLAPNILSQL 210          
The following BLAST results are available for this feature:
BLAST of CF834772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PRX2E_ARATH6.221e-5378.29Peroxiredoxin-2E, chloroplastic OS=Arabidopsis tha... [more]
PR2E1_ORYSJ6.221e-5379.07Peroxiredoxin-2E-1, chloroplastic OS=Oryza sativa ... [more]
PR2E2_ORYSJ1.173e-5177.69Peroxiredoxin-2E-2, chloroplastic OS=Oryza sativa ... [more]
PRX2C_ORYSJ3.664e-3759.69Peroxiredoxin-2C OS=Oryza sativa subsp. japonica G... [more]
PRX2B_ARATH1.179e-3559.69Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB... [more]
PRX2D_ARATH5.850e-3558.14Peroxiredoxin-2D OS=Arabidopsis thaliana GN=PRXIID... [more]
PRX2C_ARATH5.850e-3558.14Peroxiredoxin-2C OS=Arabidopsis thaliana GN=PRXIIC... [more]
PRX2A_ARATH7.168e-2551.30Peroxiredoxin-2A OS=Arabidopsis thaliana GN=PRXIIA... [more]
PMP20_LIPKO6.709e-2345.04Putative peroxisomal peroxiredoxin OS=Lipomyces ko... [more]
PRDX5_MOUSE1.952e-2245.38Peroxiredoxin-5, mitochondrial OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06B14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834772 ID=CF834772; Name=CF834772; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTGGGAAAAAAAATAAATTGAGCAGGATAAACCTCT
AAACAGCTCTGAAAATTCAAATGCACAAGGAGAAGTACAAATTTCAAAAC
CCGAAACACGAGTTTTTAGTAACAAAGACACATTATTCAACACTCTAATG
AAGTTAAATTATTAAAAAAAAAAAAACTATCTCACCGAAATCACAGAGCT
TTGAGCATGGCCTCAGCTCCGCTGAAAGTAAAGGCGCCGCCCTCCTCCAA
ATTGAGCACCTTAACGACGCCGTTTTCTGCCAAAAGGGCGTACCTCCTGG
ACCTAACTCCCAATCCCATAGGCTTGTCACTCAAGTCGAGCTCACAGCCA
ATAGCCTTAGTGAACACCCCGTTCCCATCAGACAACAAAAGCACTTCATC
GTTGATTCCAAGATTCTCCTGGCAGGCCCTCATAACGAAGGCGTCGTTCA
CGGAAATGCAGGCGACGATGTCGACGCCTTTGGATTTCAACTCGGCGGAT
TTCTCGACGAAGCCCGGGAGGTGTTTTTGGGAGCAGGTGGGGGTGAAGGC
GCCGGGGACGGCGAAGAGGATTGCTTTTTTATTGG
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