CF834810

Overview
NameCF834810
Unique NameCF834810
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834810_ssr289 microsatellite CF834810_ssr289:289..300. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12573 contig Csv1_Contig12573:597..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834810 vs. ExPASy Swiss-Prot
Match: RAN1B_LOTJA (GTP-binding nuclear protein Ran1B (Fragment) OS=Lotus japonicus GN=RAN1B PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.707e-18
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = -2
Query:  250 NLHFVESPALAPPEVQIDLAAQQQHEDELAAAASQPLPDEDDDAFE 387
            NLHFVESPALAPPEVQIDLAAQQQHE ELAAAASQPLPD+DDDAF+
Sbjct:  164 NLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFD 209          
BLAST of CF834810 vs. ExPASy Swiss-Prot
Match: RAN3_ARATH (GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.842e-18
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = -2
Query:  250 NLHFVESPALAPPEVQIDLAAQQQHEDELAAAASQPLPDEDDDAFE 387
            NLHFVESPALAPPEVQIDLAAQQQHE ELAAAASQPLPD+DDD FE
Sbjct:  176 NLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221          
BLAST of CF834810 vs. ExPASy Swiss-Prot
Match: RAN1A_LOTJA (GTP-binding nuclear protein Ran1A (Fragment) OS=Lotus japonicus GN=RAN1A PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.409e-17
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = -2
Query:  250 NLHFVESPALAPPEVQIDLAAQQQHEDELAAAASQPLPDEDDDAFE 387
            NLHFVESPALAPPEVQIDLAAQQQHE ELA AASQPLPD+DDDAF+
Sbjct:  164 NLHFVESPALAPPEVQIDLAAQQQHEAELAQAASQPLPDDDDDAFD 209          
BLAST of CF834810 vs. ExPASy Swiss-Prot
Match: RANA1_TOBAC (GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.139e-17
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = -2
Query:  250 NLHFVESPALAPPEVQIDLAAQQQHEDELAAAASQPLPDEDDDAFE 387
            NLHFVESPALAPPEVQIDLAAQQQHE ELAAAASQPLPD+DD+ F+
Sbjct:  176 NLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDETFD 221          
BLAST of CF834810 vs. ExPASy Swiss-Prot
Match: RAN2_ARATH (GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 5.919e-16
Identity = 38/46 (82.61%), Postives = 44/46 (95.65%), Query Frame = -2
Query:  250 NLHFVESPALAPPEVQIDLAAQQQHEDELAAAASQPLPDEDDDAFE 387
            NLHFVESPALAPPEV +D+AAQQQ+E +LAAAA+QPLPD+DDDAFE
Sbjct:  176 NLHFVESPALAPPEVHLDIAAQQQNEADLAAAAAQPLPDDDDDAFE 221          
BLAST of CF834810 vs. ExPASy Swiss-Prot
Match: RAN_VICFA (GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.730e-16
Identity = 37/46 (80.43%), Postives = 43/46 (93.48%), Query Frame = -2
Query:  250 NLHFVESPALAPPEVQIDLAAQQQHEDELAAAASQPLPDEDDDAFE 387
            NLHFVESPALAPPEVQID+A QQ+HE+E+  AA+QPLPD+DDDAFE
Sbjct:  176 NLHFVESPALAPPEVQIDIALQQRHENEILEAANQPLPDDDDDAFE 221          
BLAST of CF834810 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSJ (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. japonica GN=RAN1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.722e-15
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = -2
Query:  250 NLHFVESPALAPPEVQIDLAAQQQHEDELAAAASQPLPDEDDDAFE 387
            NLHFVE+PALAPP+V IDLAAQQQHE ELAAAA+QPLPD+DDD  E
Sbjct:  176 NLHFVETPALAPPDVTIDLAAQQQHEAELAAAAAQPLPDDDDDLIE 221          
BLAST of CF834810 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSI (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. indica GN=RAN1 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.722e-15
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = -2
Query:  250 NLHFVESPALAPPEVQIDLAAQQQHEDELAAAASQPLPDEDDDAFE 387
            NLHFVE+PALAPP+V IDLAAQQQHE ELAAAA+QPLPD+DDD  E
Sbjct:  176 NLHFVETPALAPPDVTIDLAAQQQHEAELAAAAAQPLPDDDDDLIE 221          
BLAST of CF834810 vs. ExPASy Swiss-Prot
Match: RAN2_SOLLC (GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.938e-15
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = -2
Query:  250 NLHFVESPALAPPEVQIDLAAQQQHEDELAAAASQPLPDEDDDAFE 387
            NLHFVESPALAPPEVQIDLAAQ  HE EL AA +QPLPD+DD+AFE
Sbjct:  176 NLHFVESPALAPPEVQIDLAAQALHEQELQAALNQPLPDDDDEAFE 221          
BLAST of CF834810 vs. ExPASy Swiss-Prot
Match: RAN1_SOLLC (GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.544e-15
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = -2
Query:  250 NLHFVESPALAPPEVQIDLAAQQQHEDELAAAASQPLPDEDDDAFE 387
            NLHFVESPALAPPEV IDLAAQ  HE+EL  AA+QPLPD+DD+AFE
Sbjct:  176 NLHFVESPALAPPEVHIDLAAQALHEEELQQAANQPLPDDDDEAFE 221          
The following BLAST results are available for this feature:
BLAST of CF834810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RAN1B_LOTJA3.707e-1893.48GTP-binding nuclear protein Ran1B (Fragment) OS=Lo... [more]
RAN3_ARATH4.842e-1893.48GTP-binding nuclear protein Ran-3 OS=Arabidopsis t... [more]
RAN1A_LOTJA1.409e-1791.30GTP-binding nuclear protein Ran1A (Fragment) OS=Lo... [more]
RANA1_TOBAC3.139e-1789.13GTP-binding nuclear protein Ran-A1 OS=Nicotiana ta... [more]
RAN2_ARATH5.919e-1682.61GTP-binding nuclear protein Ran-2 OS=Arabidopsis t... [more]
RAN_VICFA7.730e-1680.43GTP-binding nuclear protein Ran/TC4 OS=Vicia faba ... [more]
RAN1_ORYSJ1.722e-1582.61GTP-binding nuclear protein Ran-1 OS=Oryza sativa ... [more]
RAN1_ORYSI1.722e-1582.61GTP-binding nuclear protein Ran-1 OS=Oryza sativa ... [more]
RAN2_SOLLC2.938e-1582.61GTP-binding nuclear protein Ran2 OS=Solanum lycope... [more]
RAN1_SOLLC6.544e-1580.43GTP-binding nuclear protein Ran1 OS=Solanum lycope... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06C10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834810 ID=CF834810; Name=CF834810; organism=Citrus sinensis; type=EST; length=388bp
ATATGGGGCCCCTTATAGACATCCTAGAGAAAATTGGATGGATCCCCCGC
TGGTAAACAGAGAATGTAGACGCGAAAACAAAAACAAGTAGAGACTGACA
TGAATTAGGCAAGAGTAAGAAACACAATGCTAAATAAGCCAGCAATGGTT
CAATCCAAAGCTCATGTCAAAAGACACCCAACAGATCCTCAAAACAATCA
ATATTGAACTCTTCACTCCAATAATCACACGATCCATTGTCTTCTTTCAC
TCGAAGGCGTCATCATCTTCATCTGGGAGAGGTTGACTAGCAGCAGCAGC
AAGTTCATCTTCATGTTGTTGCTGAGCAGCCAAATCGATTTGCACCTCTG
GGGGAGCAAGGGCAGGAGACTCGACAAAATGCAAGTTA
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