CF834886

Overview
NameCF834886
Unique NameCF834886
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF834886 vs. ExPASy Swiss-Prot
Match: SF3A1_ARATH (Probable splicing factor 3 subunit 1 OS=Arabidopsis thaliana GN=At1g14650 PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 68/93 (73.12%), Postives = 78/93 (83.87%), Query Frame = -1 
Query:  349 AQHPGPVSVTVAVPNVDEGNLKGQLLEIAMQSLSETVGSLKEKISGEIQLPANKQKLSGKGGFLKDNMSLAYYNVTTGETLTLSLRERGGRKR 627
            AQHPGP ++ V+ PN ++G    Q +EI +QSLSE VGSLKEKI+GEIQ+PANKQKLSGK GFLKDNMSLA+YNV  GE LTLSLRERGGRKR
Sbjct:  697 AQHPGPATIRVSKPNENDG----QFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERGGRKR 785
[Close]
BLAST of CF834886 vs. ExPASy Swiss-Prot
Match: SF3A1_HUMAN (Splicing factor 3 subunit 1 OS=Homo sapiens GN=SF3A1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.625e-14
Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = -1 
Query:  349 QHPGPVSVTVAVPNVD---EGNLKGQLLEIAMQSLSETVGSLKEKISGEIQLPANKQKLSGKGGFLKDNMSLAYYNVTTGETLTLSLRERGGRKR 624
            ++ GPVS+ V VPN+    E  L GQ+L   +  L++ V  +K KI     +PA KQKL  +G F+KD+ SLAYYN+  G  + L+L+ERGGRK+
Sbjct:  700 RNKGPVSIKVQVPNMQDKTEWKLNGQVLVFTLP-LTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKERGGRKK 793
[Close]
BLAST of CF834886 vs. ExPASy Swiss-Prot
Match: SF3A1_BOVIN (Splicing factor 3 subunit 1 OS=Bos taurus GN=SF3A1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.625e-14
Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = -1 
Query:  349 QHPGPVSVTVAVPNVD---EGNLKGQLLEIAMQSLSETVGSLKEKISGEIQLPANKQKLSGKGGFLKDNMSLAYYNVTTGETLTLSLRERGGRKR 624
            ++ GPVS+ V VPN+    E  L GQ+L   +  L++ V  +K KI     +PA KQKL  +G F+KD+ SLAYYN+  G  + L+L+ERGGRK+
Sbjct:  700 RNKGPVSIKVQVPNMQDKTEWKLNGQVLVFTLP-LTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKERGGRKK 793
[Close]
BLAST of CF834886 vs. ExPASy Swiss-Prot
Match: SF3A1_MOUSE (Splicing factor 3 subunit 1 OS=Mus musculus GN=Sf3a1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.928e-13
Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = -1 
Query:  349 QHPGPVSVTVAVPNVD---EGNLKGQLLEIAMQSLSETVGSLKEKISGEIQLPANKQKLSGKGGFLKDNMSLAYYNVTTGETLTLSLRERGGRKR 624
            ++ GPVS+ V VPN+    E  L GQ L   +  L++ V  +K KI     +PA KQKL  +G F+KD+ SLAYYN+ +G  + L+L+ERGGRK+
Sbjct:  698 RNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLP-LTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERGGRKK 791
The following BLAST results are available for this feature:
BLAST of CF834886 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SF3A1_ARATH3.497e-3173.12Probable splicing factor 3 subunit 1 OS=Arabidopsi... [more]
SF3A1_HUMAN6.625e-1445.26Splicing factor 3 subunit 1 OS=Homo sapiens GN=SF3... [more]
SF3A1_BOVIN6.625e-1445.26Splicing factor 3 subunit 1 OS=Bos taurus GN=SF3A1... [more]
SF3A1_MOUSE1.928e-1345.26Splicing factor 3 subunit 1 OS=Mus musculus GN=Sf3... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06E17_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834886 ID=CF834886; Name=CF834886; organism=Citrus sinensis; type=EST; length=627bp
GACACCCCTTTAGGGCGGAAATGGAAACCACAATATGTAGTAATATCCTT
AGTGGATTACTCGTCTATGCCTGAGCAAAAGGAACTCCTCTGATTCCCAT
TGCTCTTATAGAGTTGCCAAGAAGCTGGTTCTGAAGCAGACATTAATTTA
CCATCAGGTCCATGACAACCACAATATGGTCTCAAATACTTATCCCAAAG
AAAAATAAGCAATACAACATCCCTCATATAGCATCAATGCAGGTTGAGTT
ATAAAACTGTTGTTATACATGGAAAAATGGAAAAGTCTTAGGGCAAGAAG
GCAGTTCCAACAAAAACCTCAAGTATAGCCCCATTAAGAAGCCCATTATC
TCTTTCTACCACCCCGCTCTCTCAAAGAAAGAGTTAGTGTTTCCCCTGTT
GTGACATTATAATATGCAAGTGACATATTATCCTTCAGAAAACCACCTTT
TCCACTCAATTTCTGTTTGTTTGCAGGAAGTTGAATCTCCCCAGAAATTT
TCTCTTTCAAACTGCCCACAGTTTCAGATAAGGACTGCATTGCAATCTCC
AGAAGTTGCCCTTTCAGATTTCCTTCATCAACATTGGGAACAGCCACGGT
GACGCTAACAGGTCCCGGATGCTGTGC
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