CF835000
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835000 vs. ExPASy Swiss-Prot
Match: NEP1_MOUSE (Probable ribosome biogenesis protein NEP1 OS=Mus musculus GN=Emg1 PE=1 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 9.875e-31 Identity = 67/133 (50.38%), Postives = 89/133 (66.92%), Query Frame = -3 Query: 316 TDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNCVASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGYPLSAACCIARICEALEDKW 714 T K VL EV P R+PRT+ RF G+M+QLL KLS+ A +KLL+VIKNPV+ + PV KIG S+S E + +R V S D +VFVVGA AHGK+ +YT+ +++IS YPLSAA A++ A E+ W Sbjct: 112 TQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFSVEDISDIRELVPS---SDPVVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKVTTAFEEVW 241
BLAST of CF835000 vs. ExPASy Swiss-Prot
Match: EMG1_YEAST (Essential for mitotic growth 1 OS=Saccharomyces cerevisiae GN=EMG1 PE=1 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.873e-30 Identity = 61/136 (44.85%), Postives = 94/136 (69.12%), Query Frame = -3 Query: 313 TDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNCVASISDDDNLVFVVGAMAHGKIDC--DYTDDLIAISGYPLSAACCIARICEALEDKWN 714 T +G+L EV P VR+PRT+KRF+G+M+QLL KLSI +V EKLL+VIKNP+T +LP RK+ S+ + ++++++ + + DD+++ VGAMA GK + +Y D+ + +S YPLSA+ ++ C ED WN Sbjct: 116 TSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDA-PVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWN 250
BLAST of CF835000 vs. ExPASy Swiss-Prot
Match: NEP1_HUMAN (Probable ribosome biogenesis protein NEP1 OS=Homo sapiens GN=EMG1 PE=1 SV=4) HSP 1 Score: 130.183 bits (326), Expect = 1.092e-29 Identity = 65/133 (48.87%), Postives = 88/133 (66.17%), Query Frame = -3 Query: 316 TDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNCVASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGYPLSAACCIARICEALEDKW 714 T K VL EV P R+PRT+ RF G+M+QLL KLS+ A +KLL+VIKNPV+ + PV K+G S+S + +R V S D +VFVVGA AHGK+ +YT+ +++IS YPLSAA A++ A E+ W Sbjct: 112 TQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSIPVVSDVRELVPS---SDPIVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKLTTAFEEVW 241
BLAST of CF835000 vs. ExPASy Swiss-Prot
Match: NEP1_DROME (Probable ribosome biogenesis protein NEP1 OS=Drosophila melanogaster GN=CG3527 PE=3 SV=2) HSP 1 Score: 128.257 bits (321), Expect = 4.149e-29 Identity = 63/138 (45.65%), Postives = 88/138 (63.77%), Query Frame = -3 Query: 316 TDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNCV-----ASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGYPLSAACCIARICEALEDKW 714 T+ VL E+ P R+PRT+KRFAG+M+QLL K I A +L+ VIKNP+T ++PV +K S+S + L R+ V S S D+ +V V+GA AHG + DYT++L +IS YPLSAA ++IC A E+ W Sbjct: 112 TEHNVLIEINPQTRIPRTFKRFAGLMVQLLHKFQIRANDSSRRLMSVIKNPITDHVPVGCKKYAMSFSGKLLPNCRDLVPHGDETSASYDEPVVIVIGAFAHGVLKTDYTEELFSISNYPLSAAIACSKICSAFEEVW 249
BLAST of CF835000 vs. ExPASy Swiss-Prot
Match: NEP1_CANAL (Nucleolar essential protein 1 OS=Candida albicans GN=NEP1 PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.743e-27 Identity = 60/135 (44.44%), Postives = 93/135 (68.89%), Query Frame = -3 Query: 316 TDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNCVASISDDDNLVFVVGAMAHGKIDC--DYTDDLIAISGYPLSAACCIARICEALEDKW 714 T +GVL EV P VR+PRT+KRF+G+M+QLL KLSI + +E LL+VIKNP+T +LP RK+ S+ +E L ++++ V ++ +++++ VGAMA GK + ++ D+ I +S YPLSA+ ++ C ED W Sbjct: 131 TARGVLIEVNPSVRIPRTFKRFSGLMVQLLHKLSIRSENSKEVLLKVIKNPITDHLPTKCRKVTLSFDAE-LKRVQDYVTTLDENESICVFVGAMARGKDNFADEFVDEKIGLSDYPLSASVACSKFCHGCEDVW 264
BLAST of CF835000 vs. ExPASy Swiss-Prot
Match: NEP1_CAEEL (Probable ribosome biogenesis protein nep-1 OS=Caenorhabditis elegans GN=Y39A1A.14 PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.130e-26 Identity = 62/133 (46.62%), Postives = 85/133 (63.91%), Query Frame = -3 Query: 316 TDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNCVASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGYPLSAACCIARICEALEDKW 714 T K VL +V P R+PRT+ RF G+M+QLL KLSI A +KL+ V+KNPV+ +LPV SRK+ S++ +L M N + + D+ LV ++G +A GKI DY D IS YPLSAA A++ LE+ W Sbjct: 97 TSKNVLVDVSPQCRIPRTFDRFCGLMVQLLHKLSIRAAETTQKLMSVVKNPVSNHLPVGSRKMLMSFNVPELT-MANKLVAPETDEPLVLIIGGIARGKIVVDYNDSETKISNYPLSAALTCAKVTSGLEEIW 228
BLAST of CF835000 vs. ExPASy Swiss-Prot
Match: MRA1_SCHPO (Multicopy suppressor of ras1 OS=Schizosaccharomyces pombe GN=mra1 PE=1 SV=2) HSP 1 Score: 117.087 bits (292), Expect = 9.565e-26 Identity = 63/133 (47.37%), Postives = 87/133 (65.41%), Query Frame = -3 Query: 322 TDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNCVASISDDDNLVFVVGAMAHGKIDCD--YTDDLIAISGYPLSAACCIARICEALED 714 T K VL EV P VR+PRT+KRF+G+M+QLL KLSI +V EKLL+VIKNPVT YLP N RK S+ + V R + ++ + ++ +GAMAHG D + D+ I+IS YPLSA+ ++ ++ED Sbjct: 223 TAKKVLIEVNPSVRIPRTFKRFSGLMVQLLHKLSIRSVNGNEKLLKVIKNPVTDYLPPNCRKATLSFDA-PTVPPRKYLETLQPNQSVCIAIGAMAHGPDDFSDGWVDEKISISDYPLSASIACSKFLHSMED 354
BLAST of CF835000 vs. ExPASy Swiss-Prot
Match: NEP1_CANGA (Nucleolar essential protein 1 OS=Candida glabrata GN=NEP1 PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.632e-25 Identity = 63/136 (46.32%), Postives = 84/136 (61.76%), Query Frame = -3 Query: 316 TDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAV-GKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNCVASISDDDNLVFVVGAMA--HGKIDCDYTDDLIAISGYPLSAACCIARICEALEDKW 714 T K VL EV P VR+PRT+KRF+G+M+QLL KLSI ++ LLRV+KNPVT+YLP + RK+ S+ +E + + D ++ VGAMA H +Y DD IAIS YPLSA+ ++ C ED W Sbjct: 95 TKKNVLIEVNPSVRIPRTFKRFSGLMVQLLHKLSIRSMESSNTHLLRVVKNPVTKYLPADCRKVTLSFDAEVMRPQE----YLGDKQSVCVFVGAMARGHDSFADEYVDDKIAISNYPLSASVACSKFCHGAEDAW 226 The following BLAST results are available for this feature:
BLAST of CF835000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835000 ID=CF835000; Name=CF835000; organism=Citrus sinensis; type=EST; length=716bpback to top |