CF835178
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA02_ARATH (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2) HSP 1 Score: 159.458 bits (402), Expect = 9.548e-39 Identity = 75/92 (81.52%), Postives = 88/92 (95.65%), Query Frame = 2 Query: 2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277 SYGLVVQSVY+NGSV+SP+VLDL+ED LVEKFAS +SMVT+LALA+SYPTLAAAPHMF+NAYKN +A+A+ATEY+FPQA+KVKEYL DPSKF Sbjct: 186 SYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKF 277
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA03_ARATH (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 6.189e-38 Identity = 73/92 (79.35%), Postives = 88/92 (95.65%), Query Frame = 2 Query: 2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277 SYGLVVQSVY+NGSV+SP+VLDL+ED LVEKFAS +SMVT+LALA+SYPTLAAAPHMF+NAYKN +A+A+AT+Y+FPQA+KVKE+L DPSKF Sbjct: 186 SYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKF 277
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA0_SOYBN (60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 1.801e-37 Identity = 75/92 (81.52%), Postives = 87/92 (94.57%), Query Frame = 2 Query: 2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277 SYGLVV SVY+NGSV+SP+VLDL+EDDL+ KFA+ VSMVT+L+LAISYPTLAAAPHMFVNAYKNV+AVA+ T+YSFP+ADKVKEYL DPSKF Sbjct: 187 SYGLVVLSVYDNGSVFSPEVLDLTEDDLIGKFAAGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPSKF 278
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA01_ARATH (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=2 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 3.072e-37 Identity = 73/92 (79.35%), Postives = 89/92 (96.74%), Query Frame = 2 Query: 2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277 SYGLVV+SVY+NGSV++P+VL+L+EDDLVEKFA+ VSM+TAL+LAISYPT+AAAPHMF+NAYKNV+AVALATEYSFPQA+ VKE+L DP+KF Sbjct: 187 SYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKF 278
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA0_ORYSJ (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3) HSP 1 Score: 147.517 bits (371), Expect = 3.755e-35 Identity = 68/92 (73.91%), Postives = 85/92 (92.39%), Query Frame = 2 Query: 2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277 SYGLV+ +VY++GSV+SP+VLDL+EDDL+EKFAS VSMV +++LAISYPT+AAAPHMF+N YKNV+AVA+ TEYS+P ADK+KEYL DPSKF Sbjct: 187 SYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKF 278
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA0_MAIZE (60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3) HSP 1 Score: 147.132 bits (370), Expect = 4.904e-35 Identity = 69/92 (75.00%), Postives = 83/92 (90.22%), Query Frame = 2 Query: 2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277 SYGL V SVYE+GSV+SP+VLDLSE+DL+EKFA+ VSMV +L+LAISYPTLAA PHMF+N YKNV+AVA+ T+YS+P ADK+KEYL DPSKF Sbjct: 187 SYGLQVTSVYEDGSVFSPEVLDLSEEDLIEKFATGVSMVASLSLAISYPTLAAVPHMFINGYKNVLAVAVETDYSYPHADKIKEYLKDPSKF 278
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA0_LUPLU (60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 5.251e-29 Identity = 63/92 (68.48%), Postives = 75/92 (81.52%), Query Frame = 2 Query: 2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277 SYGLVV SVY+NGSV+ P+VLDL+EDDL+EKFA VS + P +AAPH+F+NAYKNV+AVA+ATEYSFPQAD+VKEYL DPSKF Sbjct: 187 SYGLVVLSVYDNGSVFKPEVLDLTEDDLLEKFAIGVSQCYFSDTSHFIPNPSAAPHVFINAYKNVLAVAVATEYSFPQADEVKEYLKDPSKF 278
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA0_ICTPU (60S acidic ribosomal protein P0 OS=Ictalurus punctatus GN=rplp0 PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.430e-26 Identity = 53/92 (57.61%), Postives = 71/92 (77.17%), Query Frame = 2 Query: 2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277 SYGL++Q VY+NGSVYSP+VLD++ED L ++F V + ++ L I YPTLA+ PH +N YK V+ VA+ T+YSFP ADKVK +LADPS+F Sbjct: 184 SYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLEGVRNIASVCLQIGYPTLASIPHSIINGYKRVLRVAVETDYSFPMADKVKAFLADPSRF 275
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA0_DANRE (60S acidic ribosomal protein P0 OS=Danio rerio GN=rplp0 PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 2.065e-25 Identity = 51/92 (55.43%), Postives = 70/92 (76.09%), Query Frame = 2 Query: 2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277 SYGL++Q VY+NGSVYSP+VLD++ED L ++F V + ++ L I YPTLA+ PH +N YK V+AV + T+Y+FP A+KVK YLADP+ F Sbjct: 187 SYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLKGVRNIASVCLQIGYPTLASIPHTIINGYKRVLAVTVETDYTFPLAEKVKAYLADPTAF 278
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA0_RANSY (60S acidic ribosomal protein P0 OS=Rana sylvatica GN=RPLP0 PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 3.522e-25 Identity = 51/92 (55.43%), Postives = 70/92 (76.09%), Query Frame = 2 Query: 2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277 S+GL++Q VY+NGS+YSP+VLD++ED L +F V + ++ L I YPT+A+ PH VN YK V+A+A+ T+YSFP ADKVK +LADPS F Sbjct: 184 SFGLIIQQVYDNGSIYSPEVLDITEDALRARFLEGVRNIASVCLQIGYPTVASVPHSVVNGYKRVLALAVETDYSFPLADKVKAFLADPSAF 275 The following BLAST results are available for this feature:
BLAST of CF835178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 28
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835178 ID=CF835178; Name=CF835178; organism=Citrus sinensis; type=EST; length=536bpback to top |