CF835248

Overview
NameCF835248
Unique NameCF835248
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig272 contig Csv1_Contig272:2..530. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835248 vs. ExPASy Swiss-Prot
Match: BADH2_ARATH (Betaine aldehyde dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=ALDH10A9 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.193e-38
Identity = 68/78 (87.18%), Postives = 73/78 (93.59%), Query Frame = 3
Query:    3 ISKDLERCDRVSKAYQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVTQYVSDEPWGWYKSPSKL 236
            +S DLERCDRVSKA+QAGIVW+NCSQPCF QAPWGG K SGFGRELGEWGL+NYLSVKQVTQY+SDEPWGWYK PSKL
Sbjct:  426 LSNDLERCDRVSKAFQAGIVWVNCSQPCFCQAPWGGTKRSGFGRELGEWGLENYLSVKQVTQYISDEPWGWYKPPSKL 503          
BLAST of CF835248 vs. ExPASy Swiss-Prot
Match: BADH_ORYSJ (Betaine aldehyde dehydrogenase OS=Oryza sativa subsp. japonica GN=Os04g0464200 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.105e-35
Identity = 64/78 (82.05%), Postives = 71/78 (91.03%), Query Frame = 3
Query:    3 ISKDLERCDRVSKAYQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVTQYVSDEPWGWYKSPSKL 236
            IS DLERC+R+SKA Q+GIVWINCSQPCF QAPWGG K SGFGRELG+WGLDNYLSVKQVT+Y SDEP+GWY+ PSKL
Sbjct:  428 ISNDLERCERISKAIQSGIVWINCSQPCFVQAPWGGNKRSGFGRELGQWGLDNYLSVKQVTKYCSDEPYGWYRPPSKL 505          
BLAST of CF835248 vs. ExPASy Swiss-Prot
Match: BADH1_ARATH (Betaine aldehyde dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=ALDH10A8 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.591e-35
Identity = 62/76 (81.58%), Postives = 70/76 (92.11%), Query Frame = 3
Query:    3 ISKDLERCDRVSKAYQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVTQYVSDEPWGWYKSPS 230
            IS D ERCDR+S+A++AGIVWINCSQPCF+QAPWGG K SGFGRELGEWGLDNYLSVKQVT Y S++PWGWYKSP+
Sbjct:  426 ISNDTERCDRISEAFEAGIVWINCSQPCFTQAPWGGVKRSGFGRELGEWGLDNYLSVKQVTLYTSNDPWGWYKSPN 501          
BLAST of CF835248 vs. ExPASy Swiss-Prot
Match: BADH_SPIOL (Betaine aldehyde dehydrogenase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.846e-32
Identity = 56/74 (75.68%), Postives = 65/74 (87.84%), Query Frame = 3
Query:    6 SKDLERCDRVSKAYQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVTQYVSDEPWGWYKSP 227
            S DLERC+R++KA + G VW+NCSQPCF QAPWGG K SGFGRELGEWG+ NYL++KQVTQ +SDEPWGWYKSP
Sbjct:  424 SNDLERCERITKALEVGAVWVNCSQPCFVQAPWGGIKRSGFGRELGEWGIQNYLNIKQVTQDISDEPWGWYKSP 497          
BLAST of CF835248 vs. ExPASy Swiss-Prot
Match: BADH_ATRHO (Betaine aldehyde dehydrogenase, chloroplastic OS=Atriplex hortensis PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.717e-32
Identity = 56/74 (75.68%), Postives = 65/74 (87.84%), Query Frame = 3
Query:    6 SKDLERCDRVSKAYQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVTQYVSDEPWGWYKSP 227
            SKDLERC+RV+KA + G VW+NCSQPCF  APWGG K SGFGRELGEWG++NYL++KQVT  +SDEPWGWYKSP
Sbjct:  429 SKDLERCERVTKALEVGAVWVNCSQPCFVHAPWGGVKRSGFGRELGEWGIENYLNIKQVTSDISDEPWGWYKSP 502          
BLAST of CF835248 vs. ExPASy Swiss-Prot
Match: BADH_BETVU (Betaine aldehyde dehydrogenase, chloroplastic OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.409e-31
Identity = 55/74 (74.32%), Postives = 65/74 (87.84%), Query Frame = 3
Query:    6 SKDLERCDRVSKAYQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVTQYVSDEPWGWYKSP 227
            SKDLERC+RVSK  ++G VW+NCSQPCF  APWGG K SGFGRELGEWG++NYL++KQVT  +S+EPWGWYKSP
Sbjct:  427 SKDLERCERVSKLLESGAVWVNCSQPCFVHAPWGGIKRSGFGRELGEWGIENYLNIKQVTSDISNEPWGWYKSP 500          
BLAST of CF835248 vs. ExPASy Swiss-Prot
Match: BADH_AMAHP (Betaine aldehyde dehydrogenase, chloroplastic OS=Amaranthus hypochondriacus GN=BADH4 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.409e-31
Identity = 55/76 (72.37%), Postives = 68/76 (89.47%), Query Frame = 3
Query:    3 ISKDLERCDRVSKAYQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVTQYVS-DEPWGWYKSP 227
            +SKDL+RC+R++KA + G VW+NCSQPCF+QAPWGG K SGFGRELGEWG++NYL++KQVT+  S DEPWGWYKSP
Sbjct:  426 LSKDLDRCERITKALEVGAVWVNCSQPCFTQAPWGGTKRSGFGRELGEWGIENYLNIKQVTRDTSTDEPWGWYKSP 501          
BLAST of CF835248 vs. ExPASy Swiss-Prot
Match: BADH_HORVU (Betaine aldehyde dehydrogenase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.255e-29
Identity = 56/78 (71.79%), Postives = 64/78 (82.05%), Query Frame = 3
Query:    3 ISKDLERCDRVSKAYQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVTQYVSDEPWGWYKSPSKL 236
            IS DLERC+R++K   +GIVW NCSQP   QAPWGG K SGFGRELGEWGL+NYLSVKQVT+Y  DE +GWY+ PSKL
Sbjct:  428 ISDDLERCERIAKVIHSGIVWKNCSQPTLVQAPWGGNKRSGFGRELGEWGLENYLSVKQVTRYCKDELYGWYQRPSKL 505          
BLAST of CF835248 vs. ExPASy Swiss-Prot
Match: BETB_BACSU (Betaine aldehyde dehydrogenase OS=Bacillus subtilis GN=gbsA PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.853e-15
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 3
Query:    6 SKDLERCDRVSKAYQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVTQYVSDEPWGWYKS 224
            SKD+E+C+RV+   + G VWIN   P F+QAPWGG K SGFGRELG+ GL+ Y  VK V +        W+ S
Sbjct:  418 SKDIEKCERVAARLRMGTVWINDFHPYFAQAPWGGYKQSGFGRELGKIGLEEYTEVKHVYRNTKPAAVNWFNS 490          
BLAST of CF835248 vs. ExPASy Swiss-Prot
Match: AL1A1_RABIT (Retinal dehydrogenase 1 OS=Oryctolagus cuniculus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.287e-12
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 3
Query:    6 SKDLERCDRVSKAYQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVTQYVSDE 203
            +KDL++   VS A QAG VW+NC     +Q P+GG K SG GRELGE+GL  Y  VK VT  +S +
Sbjct:  429 TKDLDKAVTVSSALQAGTVWVNCYSVVSAQVPFGGFKMSGNGRELGEYGLQQYTEVKTVTVKISQK 494          
The following BLAST results are available for this feature:
BLAST of CF835248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
BADH2_ARATH1.193e-3887.18Betaine aldehyde dehydrogenase 2, mitochondrial OS... [more]
BADH_ORYSJ2.105e-3582.05Betaine aldehyde dehydrogenase OS=Oryza sativa sub... [more]
BADH1_ARATH3.591e-3581.58Betaine aldehyde dehydrogenase 1, chloroplastic OS... [more]
BADH_SPIOL2.846e-3275.68Betaine aldehyde dehydrogenase, chloroplastic OS=S... [more]
BADH_ATRHO3.717e-3275.68Betaine aldehyde dehydrogenase, chloroplastic OS=A... [more]
BADH_BETVU2.409e-3174.32Betaine aldehyde dehydrogenase, chloroplastic OS=B... [more]
BADH_AMAHP2.409e-3172.37Betaine aldehyde dehydrogenase, chloroplastic OS=A... [more]
BADH_HORVU2.255e-2971.79Betaine aldehyde dehydrogenase OS=Hordeum vulgare ... [more]
BETB_BACSU1.853e-1550.68Betaine aldehyde dehydrogenase OS=Bacillus subtili... [more]
AL1A1_RABIT7.287e-1251.52Retinal dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O14_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835248 ID=CF835248; Name=CF835248; organism=Citrus sinensis; type=EST; length=529bp
TGATATCCAAGGATTTGGAAAGGTGTGATCGTGTAAGCAAGGCTTACCAA
GCAGGCATTGTATGGATCAACTGCTCACAGCCATGCTTCTCTCAAGCTCC
ATGGGGGGGCAAAAAACATAGTGGTTTTGGCCGTGAATTAGGGGAATGGG
GACTTGATAATTACTTGAGCGTGAAGCAGGTCACTCAGTATGTCTCAGAT
GAGCCATGGGGATGGTACAAGTCTCCTTCAAAGCTGTGAAATGAAAATGA
GAAATTGCGGATGAAGCAAAACACAGATAGTAATGTGAGAGACGTACTGT
ACTGAAGCTATGTGCTAAGACTATGCAATAATAATAAGTAATGTAAAATG
ACAGAAACACTTCAGAATAGTTTATTCCCTTAGCCATGTTGTATTTCCCT
TGTGGGATATCTTCGGCTTCCATTGGTTGTAAAACCATATTCCCAGACAC
TCTTGGAGTTTAATCATGGTTTCAGGCTCTTTAGCCTGCAATTAGATTCT
TAGTTCTCGTCNNAAAAAAAAAAAAAAAA
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