CF835284

Overview
NameCF835284
Unique NameCF835284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2675 contig Csv1_Contig2675:101..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF835284 vs. ExPASy Swiss-Prot
Match: CAES_ARATH (Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana GN=At4g34215 PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 5.435e-55
Identity = 108/166 (65.06%), Postives = 123/166 (74.10%), Query Frame = 3 
Query:   45 PHECEPHPSLHRYSAELHWEPAREPLHADIDTKKACGVGPGMSFANAVDARAEGER--VGLVPCAVGGTAIKEWARGEELYESMVARSKESVNKSGGRIKALLWYQGESDASTDHDAEAYQRNMEAFISNVREDLELPSLPIIQVALASGDKYKEKVREAQLGINL 536
            P EC P+ S+ R SA+L WE A EPLH DIDT K CGVGPGM+FANAV  R E +   +GLVPCA GGTAIKEW RG  LYE MV R++ES  K GG IKA+LWYQGESD    HDAE+Y  NM+  I N+R DL LPSLPIIQVA+ASG  Y +KVREAQLG+ L
Sbjct:   55 PPECAPNSSILRLSADLRWEEAHEPLHVDIDTGKVCGVGPGMAFANAVKNRLETDSAVIGLVPCASGGTAIKEWERGSHLYERMVKRTEES-RKCGGEIKAVLWYQGESDVLDIHDAESYGNNMDRLIKNLRHDLNLPSLPIIQVAIASGGGYIDKVREAQLGLKL 219

HSP 2 Score: 23.0978 bits (48), Expect = 5.435e-55
Identity = 11/17 (64.71%), Postives = 11/17 (64.71%), Query Frame = 1 
Query:  526 GSIFKNDVCVDAKGLHL 576
            G    N VCVDAKGL L
Sbjct:  216 GLKLSNVVCVDAKGLPL 232
The following BLAST results are available for this feature:
BLAST of CF835284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CAES_ARATH5.435e-5565.06Probable carbohydrate esterase At4g34215 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06P11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835284 ID=CF835284; Name=CF835284; organism=Citrus sinensis; type=EST; length=577bp
GGATCCCACGGGCTGCAGGGCACATCTACCGCTTTGGGGTAGACCCGCAC
GAGTGCGAACCTCACCCCTCCCTTCACCGCTACAGCGCCGAGCTCCACTG
GGAGCCGGCGCGTGAGCCTCTCCACGCGGACATCGACACCAAGAAGGCCT
GCGGCGTGGGGCCCGGGATGTCTTTCGCCAATGCGGTCGATGCGCGTGCG
GAGGGGGAGCGAGTGGGGCTGGTGCCGTGTGCGGTGGGGGGAACTGCCAT
CAAAGAGTGGGCCCGTGGAGAGGAGTTGTACGAGAGTATGGTGGCGAGGA
GTAAAGAGAGTGTGAACAAGAGCGGCGGACGGATTAAGGCTTTGTTGTGG
TACCAAGGGGAGAGTGACGCGTCGACGGATCACGATGCCGAGGCTTACCA
GCGGAACATGGAGGCATTCATTAGTAATGTCAGGGAAGATCTTGAGTTGC
CTTCACTCCCTATAATTCAGGTAGCGCTTGCTTCAGGAGATAAGTACAAA
GAGAAAGTAAGGGAAGCGCAACTGGGGATCAATCTTCAAAAATGATGTGT
GTGTCGATGCCAAGGGATTGCATCTCA
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