CF835298
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835298 vs. ExPASy Swiss-Prot
Match: CHLP_ARATH (Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=CHLP PE=1 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 1.705e-39 Identity = 76/98 (77.55%), Postives = 88/98 (89.80%), Query Frame = 2 Query: 14 LSPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERADKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVAK 307 +SPSN+AVDIG+TLK HEYIGMVRREVLDAYLRERA+K+GA+VINGLF+KMD P N++ PY L+YTEYDG G G K+T+EVDAVIGADGANSRVAK Sbjct: 123 ISPSNIAVDIGRTLKEHEYIGMVRREVLDAYLRERAEKSGATVINGLFLKMDHPENWDSPYTLHYTEYDGKTGATGTKKTMEVDAVIGADGANSRVAK 220
BLAST of CF835298 vs. ExPASy Swiss-Prot
Match: CHLP_TOBAC (Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 8.462e-39 Identity = 78/98 (79.59%), Postives = 86/98 (87.76%), Query Frame = 2 Query: 14 LSPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERADKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVAK 307 +SPSNVAVDIGQTLKPHEYIGMVRREVLDAYLR+RA + GASV+NGLF+KMD+P+ PYVL+YT YD G GEKRTLEVDAVIGADGANSRVAK Sbjct: 120 ISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRDRAAEAGASVLNGLFLKMDMPKAPNAPYVLHYTAYDSKTNGAGEKRTLEVDAVIGADGANSRVAK 217
BLAST of CF835298 vs. ExPASy Swiss-Prot
Match: CHLP_ORYSJ (Geranylgeranyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLP PE=2 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 2.232e-31 Identity = 66/99 (66.67%), Postives = 78/99 (78.79%), Query Frame = 2 Query: 14 LSPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERADKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGV-GEKRTLEVDAVIGADGANSRVAK 307 +SPSNVAVDIG TL PHEYIGMVRREVLDAYLR RA+ GA V+NGLF++ + P+ YV++Y YD + G GEKRT EVDA++GADGANSRVAK Sbjct: 118 ISPSNVAVDIGGTLAPHEYIGMVRREVLDAYLRSRAEGAGAEVVNGLFLRYEAPKEPNGSYVVHYNHYDSSNGKAGGEKRTFEVDAIVGADGANSRVAK 216
BLAST of CF835298 vs. ExPASy Swiss-Prot
Match: CHLP_SYNY3 (Geranylgeranyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=chlP PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 3.688e-26 Identity = 58/98 (59.18%), Postives = 71/98 (72.45%), Query Frame = 2 Query: 14 LSPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERADKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVAK 307 +SPSN+ V+IGQTLK EYIGM RREVLD +LRERA+K G VING K+D+P PY L+Y ++ G GE + L+VD VIGADGANSR+AK Sbjct: 70 ISPSNIEVNIGQTLKDDEYIGMCRREVLDGFLRERAEKLGTKVINGTVYKLDIPSKDSDPYTLHYADH-SVGGTTGEMKILKVDVVIGADGANSRIAK 166 The following BLAST results are available for this feature:
BLAST of CF835298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835298 ID=CF835298; Name=CF835298; organism=Citrus sinensis; type=EST; length=308bpback to top |