CK739476

Overview
NameCK739476
Unique NameCK739476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739476 vs. ExPASy Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.023e-52
Identity = 112/175 (64.00%), Postives = 128/175 (73.14%), Query Frame = 3
Query:    9 MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESRGTDGRRXXXXXXXXXXXXXXXXXXXXXXXXGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKMKDKYKCGSNVFWKW 521
            MAAMNSSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  G++GRR                        GVIDEYLERSK NKELND+KRLATSGANFARA+TVQFG+CKFPENFTGCQDLAKQKKVPFIS+D+ LEC+ KDKYKCGSNVFWKW
Sbjct:    1 MAAMNSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVDGSNGRRSAMVFLAATLFSTAAVSASANA--GVIDEYLERSKTNKELNDKKRLATSGANFARAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171          
BLAST of CK739476 vs. ExPASy Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.928e-39
Identity = 71/84 (84.52%), Postives = 81/84 (96.43%), Query Frame = 3
Query:  270 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKMKDKYKCGSNVFWKW 521
            + DEYLE+SKANKELND+KRLATSGANFARAYTV+FG+C+FP NFTGCQDLAKQKKVPFISDDLE+EC+ K+K+KCGSNVFWKW
Sbjct:   29 IFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112          
BLAST of CK739476 vs. ExPASy Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.873e-38
Identity = 71/84 (84.52%), Postives = 79/84 (94.05%), Query Frame = 3
Query:  270 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKMKDKYKCGSNVFWKW 521
            V DEYLE+SK NKELND+KR ATSGANFARAYTVQFG+CKFP NFTGCQDLAKQKKVPFI+DDLE+EC+ K+K+KCGSNVFWKW
Sbjct:   62 VFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW 145          
BLAST of CK739476 vs. ExPASy Swiss-Prot
Match: PSAN_VOLCA (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.141e-19
Identity = 45/79 (56.96%), Postives = 61/79 (77.22%), Query Frame = 3
Query:  267 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKMKDKYKCGS 503
            GV+++ L +S ANK LN++KRLATS AN AR+ TV  GTC+FPENF GC++LA  K V +I++DL++EC+ KD   CGS
Sbjct:   54 GVVEDLLAKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYIAEDLKIECEGKDAKSCGS 132          
The following BLAST results are available for this feature:
BLAST of CK739476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAN_ARATH1.023e-5264.00Photosystem I reaction center subunit N, chloropla... [more]
PSAN_MAIZE4.928e-3984.52Photosystem I reaction center subunit N, chloropla... [more]
PSAN_HORVU1.873e-3884.52Photosystem I reaction center subunit N, chloropla... [more]
PSAN_VOLCA1.141e-1956.96Photosystem I reaction center subunit N, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_5939 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE56H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739476 ID=CK739476; Name=CK739476; organism=Citrus sinensis; type=EST; length=577bp
CAGGAGCCATGGCAGCCATGAACTCTAGTGTACTCGCATGCAACTATGCC
ATTTCAGGCAGTGCTGGATCATCTGAGCTCAATGCAAAGATTGTTTCAGT
TTCAACCCCGGCTGTGCATGGCCACAAAATGCCTGTGATCAGAGCTCAAC
AAGTTGATGTTTCAAAAGAATCAAGAGGAACTGATGGAAGGAGAGCTGCC
ATGGCTCTTCTAGCAGTTACCCTTTTCACCACAGCTACTGCTGCTGCTTC
TTCTTCTGCTAATGCTGGGGTCATCGATGAATACCTTGAGAGAAGCAAAG
CCAACAAGGAATTGAATGACCAGAAGAGATTGGCAACAAGTGGTGCAAAC
TTTGCCAGAGCATACACTGTTCAATTTGGCACATGCAAGTTCCCTGAGAA
CTTCACAGGCTGCCAAGATCTTGCCAAGCAAAAGAAAGTGCCATTCATCT
CGGATGATTTGGAATTGGAGTGCAAAATGAAAGATAAATACAAGTGTGGT
TCCAATGTTTTCTGGAAATGGGGAAGTGGGACAACTGATCTCTTTAACAT
TTTATTTTACCCCTCCCATGTATCTAA
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