CK739480

Overview
NameCK739480
Unique NameCK739480
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739480 vs. ExPASy Swiss-Prot
Match: NIFU3_ARATH (NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=NIFU3 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.205e-58
Identity = 81/100 (81.00%), Postives = 93/100 (93.00%), Query Frame = 3
Query:  135 LKMGIETRLRDKIPEILEVEQILDTETG-LELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQL 431
            LKMGIE+RLRDKIPEI+ VEQ L++ETG LELN+ENIEKVL+E+RPYL+GTGGG LEL++ID YVV+VRL+GPAAGVMTVRVALTQKLRE IPSI AVQL
Sbjct:  135 LKMGIESRLRDKIPEIMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGGGGLELVEIDGYVVKVRLTGPAAGVMTVRVALTQKLRETIPSIGAVQL 234          

HSP 2 Score: 89.7373 bits (221), Expect = 1.205e-58
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 2
Query:    2 RVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTPKDG 145
            RVLDEVRP LMADGGNVALHEIDGLVVVLKLQGACGSCPSS+MT K G
Sbjct:   91 RVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMG 138          
BLAST of CK739480 vs. ExPASy Swiss-Prot
Match: NIFU2_ARATH (NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.602e-52
Identity = 73/99 (73.74%), Postives = 87/99 (87.88%), Query Frame = 3
Query:  135 LKMGIETRLRDKIPEILEVEQILDTETGLELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQL 431
            +KMGIE RL +KIPEI+ VE + D ETGLELNEENIEKVL EIRPYL GT  G L+L++I+D +V++R++GPAAGVMTVRVA+TQKLREKIPSIAAVQL
Sbjct:  136 MKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAVQL 234          

HSP 2 Score: 80.1073 bits (196), Expect = 2.602e-52
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 2
Query:    5 VLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTPKDG 145
            VLDE+RP LM+DGGNVALHEIDG +V +KLQGACGSCPSSTMT K G
Sbjct:   93 VLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMG 139          
BLAST of CK739480 vs. ExPASy Swiss-Prot
Match: NIFU1_ORYSJ (NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.335e-44
Identity = 65/99 (65.66%), Postives = 80/99 (80.81%), Query Frame = 3
Query:  135 LKMGIETRLRDKIPEILEVEQILDTETGLELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQL 431
            +K GIE RL +KIP++  VE + D ETGLELNEEN+EKVL EIRPYLAGTGGG L+ + I   +V+VRL+GPAA V TVR+A+++KLREKIPSI  VQL
Sbjct:  126 IKRGIERRLMEKIPDVAAVEPVTDKETGLELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKLREKIPSIQIVQL 224          

HSP 2 Score: 70.8626 bits (172), Expect = 1.335e-44
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 2
Query:    5 VLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTPKDG 145
            VLD+VRP L ADGG+VALHEI G VV LKLQGACGSCPSS +T K G
Sbjct:   83 VLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRG 129          
BLAST of CK739480 vs. ExPASy Swiss-Prot
Match: NIFU1_ARATH (NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 5.642e-12
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 2
Query:    5 VLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMT 133
            VL++VRP L++DGGNV +  ++  VV LKLQGAC SCPSS+ T
Sbjct:   93 VLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTT 135          

HSP 2 Score: 36.1946 bits (82), Expect = 5.642e-12
Identity = 23/90 (25.56%), Postives = 48/90 (53.33%), Query Frame = 3
Query:  135 LKMGIETRLRDKIPEIL-EVEQILDTETGLELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLRE 401
            + MGIE  L++K  + L ++ Q+ D E   ++  E +   L  +RP +   GG + E++ ++     V+  GP +  M ++ A+ +K ++
Sbjct:  136 MTMGIERVLKEKFGDALKDIRQVFDEEV-KQITVEAVNAHLDILRPAIKNYGGSV-EVLSVEGEDCVVKYVGPESIGMGIQAAIKEKFKD 223          
BLAST of CK739480 vs. ExPASy Swiss-Prot
Match: NIFU_ANASL (Nitrogen fixation protein nifU (Fragment) OS=Anabaena sp. (strain L31) GN=nifU PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 4.936e-11
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 2
Query:    2 RVLDE-VRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTPK 139
            +VLDE VRP L+ADGG+V L+++DG +V + LQGACGSCPSST T K
Sbjct:   46 KVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCPSSTATLK 92          

HSP 2 Score: 25.409 bits (54), Expect = 4.936e-11
Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 3
Query:  135 LKMGIETRLRDKIPEILEVEQI 200
            LK+ IE+RLRD+I   L VE +
Sbjct:   91 LKIAIESRLRDRINPSLVVEAV 112          
The following BLAST results are available for this feature:
BLAST of CK739480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
NIFU3_ARATH1.205e-5881.00NifU-like protein 3, chloroplastic OS=Arabidopsis ... [more]
NIFU2_ARATH2.602e-5273.74NifU-like protein 2, chloroplastic OS=Arabidopsis ... [more]
NIFU1_ORYSJ1.335e-4465.66NifU-like protein 1, chloroplastic OS=Oryza sativa... [more]
NIFU1_ARATH5.642e-1260.47NifU-like protein 1, chloroplastic OS=Arabidopsis ... [more]
NIFU_ANASL4.936e-1165.96Nitrogen fixation protein nifU (Fragment) OS=Anaba... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_5943 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE56H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739480 ID=CK739480; Name=CK739480; organism=Citrus sinensis; type=EST; length=627bp
GAGAGTGTTGGATGAGGTACGACCTGGCTTGATGGCTGATGGGGGCAATG
TGGCTTTGCATGAGATAGATGGCCTTGTTGTGGTATTGAAGTTACAAGGA
GCATGTGGATCCTGTCCAAGCTCAACAATGACACCTAAAGATGGGAATTG
AAACCAGGCTTCGGGATAAAATCCCGGAGATACTGGAAGTGGAGCAAATC
CTGGATACTGAGACAGGACTTGAGCTAAATGAGGAAAACATTGAAAAGGT
TCTTGCTGAAATTAGGCCATACCTTGCTGGCACTGGTGGTGGAATTCTTG
AGCTGATCCAGATTGATGACTATGTTGTAAGAGTTCGGCTTAGTGGTCCT
GCAGCTGGAGTTATGACTGTTCGTGTGGCTTTGACACAGAAGTTGAGGGA
AAAGATACCTTCCATTGCAGCTGTCCAGTTGATAGATTGATGAAGAATCA
TCACAAACATCATCGGCTGCAAAGATAACAATCGACAATGAATAATCCAG
TATCAACTTTATCATATAAAAAGTTTTGCACCTGGGAAATATTAGAGTTA
TGTTGCCCTTGCTGTAACCTCTGTAGATGTAACTGATAAGGAATCGACTA
CTTGCCACAAAAAAAAAAAAAAAAAAA
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