CK739488

Overview
NameCK739488
Unique NameCK739488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739488 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 2.430e-74
Identity = 131/170 (77.06%), Postives = 146/170 (85.88%), Query Frame = 1
Query:    1 IKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERVKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRG 510
            IKRYLC DLI KVPLF           CDR +P V+SKDEKIIREGDPV RM+FI+RGR+KR QSLSKG++ATS LEPGG+LGDELLSWCLRRPF+DRLP SSATFVC+E+IEAF L +++LRYITDHFRYKFANER+KRTARYYSSNWRTWAAVNIQ AWRR R RTRG
Sbjct:  517 IKRYLCFDLINKVPLFRGMDDLILDNICDRAKPRVFSKDEKIIREGDPVQRMIFIMRGRVKRIQSLSKGVLATSTLEPGGYLGDELLSWCLRRPFLDRLPPSSATFVCLENIEAFSLGSEDLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQMAWRRRRKRTRG 686          
BLAST of CK739488 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 1.062e-53
Identity = 95/167 (56.89%), Postives = 125/167 (74.85%), Query Frame = 1
Query:    1 IKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERVKRTARYYSSNWRTWAAVNIQFAWRRYRMR 501
            IK +LCLDL+++VPLF           CDRV+ L+++K E I +EGD V RM+F+VRG ++  Q L  G+ +  +L PG F GDELLSWCLRRPF++RLP SS+T V +E+ EAFGLDA++++Y+T HFRY F NE+VKR+ARYYS  WRTWAAV +Q AWRRY+ R
Sbjct:  482 IKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIQKEGDAVQRMLFVVRGHLQSSQLLRDGVKSCCMLGPGNFSGDELLSWCLRRPFVERLPPSSSTLVTLETTEAFGLDAEDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAVQLAWRRYKHR 648          
BLAST of CK739488 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.033e-32
Identity = 69/182 (37.91%), Postives = 109/182 (59.89%), Query Frame = 1
Query:    1 IKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERVKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTENGE 540
            IKR+LCL+L+++VPLF           C+R++P ++++   I+REGDPV  M+FI+RGR++   +     G     +L+ G F G+ELL+W L       LP+S+ T   +  +EAF L+A+ L+++   FR +  + +V++T R+YS  WRTWA+  IQ AWRRY  R    +  + E  E
Sbjct:  488 IKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFVASQFR-RLHSRQVQQTFRFYSQQWRTWASCFIQAAWRRYSRRKNAELRRIEEKEE 668          
BLAST of CK739488 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.301e-32
Identity = 68/166 (40.96%), Postives = 102/166 (61.45%), Query Frame = 1
Query:    1 IKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERVKRTARYYSSNWRTWAAVNIQFAWRRY 492
            IKR+LCL L+++VPLF           C+R++P +Y++   ++REGDPV  M+FI+RGR++   +     G    S+L+ G F G+ELL+W L       LP+S+ T   +  +EAF L A  L+++   FR +  + +V+ T R+YS  WRTWAA+ IQ AWRRY
Sbjct:  499 IKRHLCLALVRRVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGDFCGEELLTWALDPKSGSNLPSSTRTAKALTEVEAFALIADELKFVASQFR-RLHSRQVQHTFRFYSQQWRTWAAIFIQAAWRRY 663          
BLAST of CK739488 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 2.301e-32
Identity = 68/180 (37.78%), Postives = 109/180 (60.56%), Query Frame = 1
Query:    1 IKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERVKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTEN 534
            I+R+LCLDL+++VPLF           C+R+   + ++   I+REGDPV  M+FI+RG+++   +     G   +  L PG F G+ELL+W L       LP+S+ T   +E +EAF L A +L+++ + FR +  +++++ T RYYS  WRTWAA  +Q AWRRY+ +     +S+ E+
Sbjct:  467 IQRHLCLDLVRRVPLFAQMDDQLLDAICERLASSLSTQGNYIVREGDPVTEMLFIIRGKLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTVNLPSSTRTVRALEEVEAFALQAGDLKFVANQFR-RLHSKKLQHTFRYYSHQWRTWAACFVQVAWRRYKRKKLAKSLSLAES 645          
BLAST of CK739488 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 3.006e-32
Identity = 68/169 (40.24%), Postives = 105/169 (62.13%), Query Frame = 1
Query:    1 IKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERVKRTARYYSSNWRTWAAVNIQFAWRRYRMR 501
            IKR+LCL+L+++VPLF           C+R++P +Y++   I+REGDPV  M+FI+RGR++   +     G     +L+ G F G+ELL+W L       LP+S+ T   +  +EAF L+A+ L+++   FR +  + +V++T R+YS  WRTWAA  IQ AWRR+  R
Sbjct:  494 IKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFVASQFR-RLHSRQVQQTFRFYSQQWRTWAACFIQAAWRRHLRR 661          
BLAST of CK739488 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 8.745e-32
Identity = 68/171 (39.77%), Postives = 103/171 (60.23%), Query Frame = 1
Query:    1 IKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERVKRTARYYSSNWRTWAAVNIQFAWRRYRMRTR 507
            IKR+LCL L+++VPLF           C+R++P ++++   ++REGDPV  M+FI+RGR++   +     G    S+L+ G F GDELL+W L       LP+S+ T   +  +EAF L A  L+++   FR +  + +V+ T R+YS  WRTWAA  +Q AWRRY  R +
Sbjct:  500 IKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFR-RLHSRQVQHTFRFYSQQWRTWAACFMQAAWRRYIKRKK 669          
BLAST of CK739488 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.669e-31
Identity = 66/166 (39.76%), Postives = 101/166 (60.84%), Query Frame = 1
Query:    1 IKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERVKRTARYYSSNWRTWAAVNIQFAWRRY 492
            IKR+LCL L+ +VP+F           CDR++P++Y+++  I+REGDPV  M+FI+RG++    +     G + +  L  G F G+ELL+W L       LP S+ T   +  +EAF L A +L+++   FR +  +++++ T RYYS  W+TWAA  IQ AWRRY
Sbjct:  472 IKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFVASQFR-RLHSKQLRHTFRYYSQQWKTWAACFIQAAWRRY 636          
BLAST of CK739488 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.263e-30
Identity = 67/171 (39.18%), Postives = 103/171 (60.23%), Query Frame = 1
Query:    1 IKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERVKRTARYYSSNWRTWAAVNIQFAWRRYRMRTR 507
            IKR+LCL L+++VPLF           C R++P ++++   ++REGDPV  M+FI+RGR++   +     G    S+L+ G F G+ELL+W L       LP+S+ T   +  +EAF L ++ L+++   FR +  + +V+ T R+YS  WRTWAA  IQ AWRRY  R +
Sbjct:  484 IKRHLCLALVRRVPLFKSMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNLPSSTRTVKALTEVEAFALTSEELKFVASQFR-RLHSRQVQHTFRFYSHQWRTWAACFIQAAWRRYCKRKK 653          
BLAST of CK739488 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 2.154e-30
Identity = 67/169 (39.64%), Postives = 99/169 (58.58%), Query Frame = 1
Query:    1 IKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERVKRTARYYSSNWRTWAAVNIQFAWRRYRMR 501
            IKR+LCLDL+KKVPLF           CDR+RP++Y+++  +IREGDPV  M+F++RGR+    +     G      L+   F G++LL W L        P S+ T   +  +EAF L A++L+ +   FR +  +++++ T R+YS  WRTW+   IQ AWRRY  R
Sbjct:  459 IKRHLCLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVNLKASDFCGEDLLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLKSVASQFR-RLHSKQLQHTFRFYSVQWRTWSVSFIQAAWRRYCRR 626          
The following BLAST results are available for this feature:
BLAST of CK739488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CNGC2_ARATH2.430e-7477.06Cyclic nucleotide-gated ion channel 2 OS=Arabidops... [more]
CNGC4_ARATH1.062e-5356.89Cyclic nucleotide-gated ion channel 4 OS=Arabidops... [more]
CNGC7_ARATH1.033e-3237.91Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
CNGC9_ARATH2.301e-3240.96Putative cyclic nucleotide-gated ion channel 9 OS=... [more]
CNG14_ARATH2.301e-3237.78Probable cyclic nucleotide-gated ion channel 14 OS... [more]
CNGC8_ARATH3.006e-3240.24Putative cyclic nucleotide-gated ion channel 8 OS=... [more]
CNGC6_ARATH8.745e-3239.77Probable cyclic nucleotide-gated ion channel 6 OS=... [more]
CNGC1_ARATH5.669e-3139.76Cyclic nucleotide-gated ion channel 1 OS=Arabidops... [more]
CNGC5_ARATH1.263e-3039.18Probable cyclic nucleotide-gated ion channel 5 OS=... [more]
CNG10_ARATH2.154e-3039.64Probable cyclic nucleotide-gated ion channel 10 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6326 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739488 ID=CK739488; Name=CK739488; organism=Citrus sinensis; type=EST; length=542bp
ATTAAACGCTATCTCTGCCTTGATCTCATAAAAAAGGTACCTTTGTTCCA
CAACCTGGATGATCTCATTCTTGACAACATATGTGACAGAGTTAGGCCCC
TTGTATACTCTAAAGATGAAAAGATAATCAGAGAAGGGGATCCTGTGCCA
AGAATGGTGTTCATTGTTCGTGGACGGATTAAACGTTGCCAAAGCCTAAG
CAAAGGCATGGTAGCAACAAGTGTGCTTGAACCAGGAGGGTTTCTGGGTG
ATGAGTTGCTTTCTTGGTGCCTACGCCGCCCGTTTATCGATCGGCTGCCA
GCATCATCAGCAACATTTGTTTGTATGGAATCCATAGAAGCATTTGGGTT
AGATGCAAAGAATCTCCGATACATCACAGATCATTTCCGGTACAAATTTG
CCAACGAAAGGGTGAAGAGAACCGCGAGATATTATTCATCAAATTGGAGG
ACATGGGCGGCTGTGAATATTCAATTTGCTTGGAGAAGATACAGGATGAG
GACTAGAGGTCCTGTGATTTCTGTAACTGAAAATGGAGAAGG
back to top