CK739488
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK739488 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1) HSP 1 Score: 277.715 bits (709), Expect = 2.430e-74 Identity = 131/170 (77.06%), Postives = 146/170 (85.88%), Query Frame = 1 Query: 1 IKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERVKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRG 510 IKRYLC DLI KVPLF CDR +P V+SKDEKIIREGDPV RM+FI+RGR+KR QSLSKG++ATS LEPGG+LGDELLSWCLRRPF+DRLP SSATFVC+E+IEAF L +++LRYITDHFRYKFANER+KRTARYYSSNWRTWAAVNIQ AWRR R RTRG Sbjct: 517 IKRYLCFDLINKVPLFRGMDDLILDNICDRAKPRVFSKDEKIIREGDPVQRMIFIMRGRVKRIQSLSKGVLATSTLEPGGYLGDELLSWCLRRPFLDRLPPSSATFVCLENIEAFSLGSEDLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQMAWRRRRKRTRG 686
BLAST of CK739488 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2) HSP 1 Score: 209.149 bits (531), Expect = 1.062e-53 Identity = 95/167 (56.89%), Postives = 125/167 (74.85%), Query Frame = 1 Query: 1 IKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERVKRTARYYSSNWRTWAAVNIQFAWRRYRMR 501 IK +LCLDL+++VPLF CDRV+ L+++K E I +EGD V RM+F+VRG ++ Q L G+ + +L PG F GDELLSWCLRRPF++RLP SS+T V +E+ EAFGLDA++++Y+T HFRY F NE+VKR+ARYYS WRTWAAV +Q AWRRY+ R Sbjct: 482 IKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIQKEGDAVQRMLFVVRGHLQSSQLLRDGVKSCCMLGPGNFSGDELLSWCLRRPFVERLPPSSSTLVTLETTEAFGLDAEDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAVQLAWRRYKHR 648
BLAST of CK739488 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.033e-32 Identity = 69/182 (37.91%), Postives = 109/182 (59.89%), Query Frame = 1 Query: 1 IKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERVKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTENGE 540 IKR+LCL+L+++VPLF C+R++P ++++ I+REGDPV M+FI+RGR++ + G +L+ G F G+ELL+W L LP+S+ T + +EAF L+A+ L+++ FR + + +V++T R+YS WRTWA+ IQ AWRRY R + + E E Sbjct: 488 IKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFVASQFR-RLHSRQVQQTFRFYSQQWRTWASCFIQAAWRRYSRRKNAELRRIEEKEE 668
BLAST of CK739488 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 2.301e-32 Identity = 68/166 (40.96%), Postives = 102/166 (61.45%), Query Frame = 1 Query: 1 IKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERVKRTARYYSSNWRTWAAVNIQFAWRRY 492 IKR+LCL L+++VPLF C+R++P +Y++ ++REGDPV M+FI+RGR++ + G S+L+ G F G+ELL+W L LP+S+ T + +EAF L A L+++ FR + + +V+ T R+YS WRTWAA+ IQ AWRRY Sbjct: 499 IKRHLCLALVRRVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGDFCGEELLTWALDPKSGSNLPSSTRTAKALTEVEAFALIADELKFVASQFR-RLHSRQVQHTFRFYSQQWRTWAAIFIQAAWRRY 663
BLAST of CK739488 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2) HSP 1 Score: 138.272 bits (347), Expect = 2.301e-32 Identity = 68/180 (37.78%), Postives = 109/180 (60.56%), Query Frame = 1 Query: 1 IKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERVKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTEN 534 I+R+LCLDL+++VPLF C+R+ + ++ I+REGDPV M+FI+RG+++ + G + L PG F G+ELL+W L LP+S+ T +E +EAF L A +L+++ + FR + +++++ T RYYS WRTWAA +Q AWRRY+ + +S+ E+ Sbjct: 467 IQRHLCLDLVRRVPLFAQMDDQLLDAICERLASSLSTQGNYIVREGDPVTEMLFIIRGKLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTVNLPSSTRTVRALEEVEAFALQAGDLKFVANQFR-RLHSKKLQHTFRYYSHQWRTWAACFVQVAWRRYKRKKLAKSLSLAES 645
BLAST of CK739488 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2) HSP 1 Score: 137.887 bits (346), Expect = 3.006e-32 Identity = 68/169 (40.24%), Postives = 105/169 (62.13%), Query Frame = 1 Query: 1 IKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERVKRTARYYSSNWRTWAAVNIQFAWRRYRMR 501 IKR+LCL+L+++VPLF C+R++P +Y++ I+REGDPV M+FI+RGR++ + G +L+ G F G+ELL+W L LP+S+ T + +EAF L+A+ L+++ FR + + +V++T R+YS WRTWAA IQ AWRR+ R Sbjct: 494 IKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFVASQFR-RLHSRQVQQTFRFYSQQWRTWAACFIQAAWRRHLRR 661
BLAST of CK739488 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2) HSP 1 Score: 136.346 bits (342), Expect = 8.745e-32 Identity = 68/171 (39.77%), Postives = 103/171 (60.23%), Query Frame = 1 Query: 1 IKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERVKRTARYYSSNWRTWAAVNIQFAWRRYRMRTR 507 IKR+LCL L+++VPLF C+R++P ++++ ++REGDPV M+FI+RGR++ + G S+L+ G F GDELL+W L LP+S+ T + +EAF L A L+++ FR + + +V+ T R+YS WRTWAA +Q AWRRY R + Sbjct: 500 IKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFR-RLHSRQVQHTFRFYSQQWRTWAACFMQAAWRRYIKRKK 669
BLAST of CK739488 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 5.669e-31 Identity = 66/166 (39.76%), Postives = 101/166 (60.84%), Query Frame = 1 Query: 1 IKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERVKRTARYYSSNWRTWAAVNIQFAWRRY 492 IKR+LCL L+ +VP+F CDR++P++Y+++ I+REGDPV M+FI+RG++ + G + + L G F G+ELL+W L LP S+ T + +EAF L A +L+++ FR + +++++ T RYYS W+TWAA IQ AWRRY Sbjct: 472 IKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFVASQFR-RLHSKQLRHTFRYYSQQWKTWAACFIQAAWRRY 636
BLAST of CK739488 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.263e-30 Identity = 67/171 (39.18%), Postives = 103/171 (60.23%), Query Frame = 1 Query: 1 IKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERVKRTARYYSSNWRTWAAVNIQFAWRRYRMRTR 507 IKR+LCL L+++VPLF C R++P ++++ ++REGDPV M+FI+RGR++ + G S+L+ G F G+ELL+W L LP+S+ T + +EAF L ++ L+++ FR + + +V+ T R+YS WRTWAA IQ AWRRY R + Sbjct: 484 IKRHLCLALVRRVPLFKSMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNLPSSTRTVKALTEVEAFALTSEELKFVASQFR-RLHSRQVQHTFRFYSHQWRTWAACFIQAAWRRYCKRKK 653
BLAST of CK739488 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2) HSP 1 Score: 131.724 bits (330), Expect = 2.154e-30 Identity = 67/169 (39.64%), Postives = 99/169 (58.58%), Query Frame = 1 Query: 1 IKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERVKRTARYYSSNWRTWAAVNIQFAWRRYRMR 501 IKR+LCLDL+KKVPLF CDR+RP++Y+++ +IREGDPV M+F++RGR+ + G L+ F G++LL W L P S+ T + +EAF L A++L+ + FR + +++++ T R+YS WRTW+ IQ AWRRY R Sbjct: 459 IKRHLCLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVNLKASDFCGEDLLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLKSVASQFR-RLHSKQLQHTFRFYSVQWRTWSVSFIQAAWRRYCRR 626 The following BLAST results are available for this feature:
BLAST of CK739488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >CK739488 ID=CK739488; Name=CK739488; organism=Citrus sinensis; type=EST; length=542bpback to top |