CK739565

Overview
NameCK739565
Unique NameCK739565
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS1_POPNI (Plastocyanin A, chloroplastic OS=Populus nigra GN=PETE PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 4.146e-33
Identity = 62/103 (60.19%), Postives = 72/103 (69.90%), Query Frame = 2
Query:   77 FTGLKAGATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            FTGLKAG+     V ++ K SAS +P+LSIKA++KDVG                  I+VLLG DDGSLAFVPS FS+S GEKIVFKNNAGFPHN+VFDED IP
Sbjct:   14 FTGLKAGSASNAKVSASAKVSASPLPRLSIKASMKDVGAAVVATAASAMIASNAMAIDVLLGADDGSLAFVPSEFSISPGEKIVFKNNAGFPHNIVFDEDSIP 116          

HSP 2 Score: 40.0466 bits (92), Expect = 4.146e-33
Identity = 19/23 (82.61%), Postives = 19/23 (82.61%), Query Frame = 3
Query:  384 PSGVDVSKISMSTEDLLNGPGET 452
            PSGVD SKISMS EDLLN  GET
Sbjct:  116 PSGVDASKISMSEEDLLNAKGET 138          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_SILPR (Plastocyanin, chloroplastic OS=Silene pratensis GN=PETE PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.922e-27
Identity = 57/103 (55.34%), Postives = 66/103 (64.08%), Query Frame = 2
Query:   77 FTGLKAGATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            F GLKA +T      +T+K  A A P++SIKA+LKDVG                   EVLLG  DG LAFVPS  S++SGEKI FKNNAGFPHNVVFDEDE+P
Sbjct:   15 FAGLKASSTTR---AATVKV-AVATPRMSIKASLKDVGVVVAATAAAGILAGNAMAAEVLLGSSDGGLAFVPSDLSIASGEKITFKNNAGFPHNVVFDEDEVP 113          

HSP 2 Score: 38.5058 bits (88), Expect = 2.922e-27
Identity = 17/22 (77.27%), Postives = 19/22 (86.36%), Query Frame = 3
Query:  384 PSGVDVSKISMSTEDLLNGPGE 449
            P+GVDV+KISM  EDLLN PGE
Sbjct:  113 PAGVDVTKISMPEEDLLNAPGE 134          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_SOLLC (Plastocyanin, chloroplastic OS=Solanum lycopersicum GN=PETE PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.248e-27
Identity = 62/105 (59.05%), Postives = 76/105 (72.38%), Query Frame = 2
Query:   77 FTGLKAGATPARVV--GSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            FTGLKAGA+ +  V  G++ K +A+ V +L++KA+LKDVG                  +EVLLGGDDGSLAF+P +FSVS+GEKI FKNNAGFPHNVVFDEDEIP
Sbjct:   14 FTGLKAGASSSSRVSTGASAKVAAAPVARLTVKASLKDVGAVVAATAVSAMLASNAMALEVLLGGDDGSLAFIPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIP 118          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS2_POPNI (Plastocyanin B, chloroplastic OS=Populus nigra GN=PETE PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 6.908e-26
Identity = 59/103 (57.28%), Postives = 71/103 (68.93%), Query Frame = 2
Query:   77 FTGLKAGATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            FTGLKA +     V ++ K SAS +P+LSIKA+LK+VG                  ++VLLG DDGSLAFVPS FSV +GEKIVFKNNAGFPHNV+FDED +P
Sbjct:   14 FTGLKAASASNAKVSASAKVSASPLPRLSIKASLKEVGAAVVATAASAMIASNAMAVDVLLGADDGSLAFVPSEFSVPAGEKIVFKNNAGFPHNVLFDEDAVP 116          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_SPIOL (Plastocyanin, chloroplastic OS=Spinacia oleracea GN=PETE PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 3.790e-24
Identity = 60/107 (56.07%), Postives = 73/107 (68.22%), Query Frame = 2
Query:   77 FTGLKAGA----TPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            FTGLKA      T A+++ +T     +AVP+LS+KA+LK+VG                  +EVLLGG DGSLAF+P  FSV+SGE+IVFKNNAGFPHNVVFDEDEIP
Sbjct:   15 FTGLKASGSIKPTTAKIIPTT-----TAVPRLSVKASLKNVGAAVVATAAAGLLAGNAMAVEVLLGGGDGSLAFLPGDFSVASGEEIVFKNNAGFPHNVVFDEDEIP 116          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_SAMNI (Plastocyanin OS=Sambucus nigra GN=PETE PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.820e-23
Identity = 39/47 (82.98%), Postives = 45/47 (95.74%), Query Frame = 2
Query:  245 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            +E+LLGG+DGSLAF+PS+FSV SGEKI FKNNAGFPHNVVFDEDE+P
Sbjct:    1 VEILLGGEDGSLAFIPSNFSVPSGEKITFKNNAGFPHNVVFDEDEVP 47          

HSP 2 Score: 40.0466 bits (92), Expect = 1.820e-23
Identity = 18/23 (78.26%), Postives = 20/23 (86.96%), Query Frame = 3
Query:  384 PSGVDVSKISMSTEDLLNGPGET 452
            PSGVD +KISMS +DLLN PGET
Sbjct:   47 PSGVDSAKISMSEDDLLNAPGET 69          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_RUMOB (Plastocyanin OS=Rumex obtusifolius GN=PETE PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.820e-23
Identity = 38/47 (80.85%), Postives = 45/47 (95.74%), Query Frame = 2
Query:  245 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            IE+ LGGDDG+LAFVP SF+V++GEKIVFKNNAGFPHN+VFDEDE+P
Sbjct:    1 IEIKLGGDDGALAFVPGSFTVAAGEKIVFKNNAGFPHNIVFDEDEVP 47          

HSP 2 Score: 41.9726 bits (97), Expect = 1.820e-23
Identity = 19/23 (82.61%), Postives = 20/23 (86.96%), Query Frame = 3
Query:  384 PSGVDVSKISMSTEDLLNGPGET 452
            P+GVD SKISMS EDLLN PGET
Sbjct:   47 PAGVDASKISMSEEDLLNAPGET 69          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS1_ARATH (Plastocyanin minor isoform, chloroplastic OS=Arabidopsis thaliana GN=PETE PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.881e-23
Identity = 59/106 (55.66%), Postives = 68/106 (64.15%), Query Frame = 2
Query:   77 FTGLKAGATPARVVGSTMKASASAV---PKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            FTGLK   +      ST+  S SA    PKL++K++LKD G                  +EVLLG DDGSLAFVPS F+V+ GEKIVFKNNAGFPHNVVFDEDEIP
Sbjct:   14 FTGLKLAVSSKPKTLSTISRSTSATRAPPKLALKSSLKDFGVIAVATAASIVLAGNAMAMEVLLGSDDGSLAFVPSEFTVAKGEKIVFKNNAGFPHNVVFDEDEIP 119          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS2_ARATH (Plastocyanin major isoform, chloroplastic OS=Arabidopsis thaliana GN=DRT112 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 2.716e-22
Identity = 54/103 (52.43%), Postives = 68/103 (66.02%), Query Frame = 2
Query:   77 FTGLKAGATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            FTGLKA    +      ++ +A A PKL++K++LK+ G                  IEVLLGG DGSLAF+P+ FS++ GEKIVFKNNAG+PHNVVFDEDEIP
Sbjct:   14 FTGLKASTIKSSAT-VRIQTAAVASPKLTVKSSLKNFGVAAVAAAASIALAGNAMAIEVLLGGGDGSLAFIPNDFSIAKGEKIVFKNNAGYPHNVVFDEDEIP 115          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_PEA (Plastocyanin, chloroplastic OS=Pisum sativum GN=PETE PE=4 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.003e-21
Identity = 53/103 (51.46%), Postives = 62/103 (60.19%), Query Frame = 2
Query:   77 FTGLKAGATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            F+GLK  A       + +  S S  P+L ++A+LKD G                  +EVLLG  DG LAFVPSS  VS+GE IVFKNNAGFPHNVVFDEDEIP
Sbjct:   14 FSGLKTNAATKVSAMAKIPTSTSQSPRLCVRASLKDFGVALVATAASAVLASNALAVEVLLGASDGGLAFVPSSLEVSAGETIVFKNNAGFPHNVVFDEDEIP 116          
The following BLAST results are available for this feature:
BLAST of CK739565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PLAS1_POPNI4.146e-3360.19Plastocyanin A, chloroplastic OS=Populus nigra GN=... [more]
PLAS_SILPR2.922e-2755.34Plastocyanin, chloroplastic OS=Silene pratensis GN... [more]
PLAS_SOLLC6.248e-2759.05Plastocyanin, chloroplastic OS=Solanum lycopersicu... [more]
PLAS2_POPNI6.908e-2657.28Plastocyanin B, chloroplastic OS=Populus nigra GN=... [more]
PLAS_SPIOL3.790e-2456.07Plastocyanin, chloroplastic OS=Spinacia oleracea G... [more]
PLAS_SAMNI1.820e-2382.98Plastocyanin OS=Sambucus nigra GN=PETE PE=1 SV=1[more]
PLAS_RUMOB1.820e-2380.85Plastocyanin OS=Rumex obtusifolius GN=PETE PE=1 SV... [more]
PLAS1_ARATH1.881e-2355.66Plastocyanin minor isoform, chloroplastic OS=Arabi... [more]
PLAS2_ARATH2.716e-2252.43Plastocyanin major isoform, chloroplastic OS=Arabi... [more]
PLAS_PEA3.003e-2151.46Plastocyanin, chloroplastic OS=Pisum sativum GN=PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5952 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739565 ID=CK739565; Name=CK739565; organism=Citrus sinensis; type=EST; length=477bp
AAAAGAAAAAACAGCAGAACCCCATTTACAGTTACAATGGCTACTGTCAC
CTCTGCAGCTGTCACCGTCCCAACTTTTCACCGGCCTTAAAGCCGGTGCA
ACACCAGCCAGAGTTGTTGGTTCCACCATGAAGGCCTCAGCCTCTGCTGT
CCCAAAGCTCAGCATCAAGGCCACACTCAAAGATGTTGGAGTGGCCGTTG
CGGCCACAGCTGCCAGCGCAATGCTTGCTAGCAATGCCATGGCCATTGAG
GTTTTGCTTGGTGGTGATGATGGGTCCTTGGCTTTTGTTCCAAGCTCTTT
CTCTGTCAGCTCCGGTGAAAAGATTGTGTTCAAGAACAATGCTGGGTTCC
CACACAACGTTGTTTTCGATGAAGATGAGATTCCCGAGTGGTGTTGATGT
TTCAAAAATCTCCATGTCTACAGAAGACCTTCTCAATGGTCCTGGAGAGA
CTTTATGCTGTTACTCTGACTGAAAAG
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