CK739899

Overview
NameCK739899
Unique NameCK739899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length227
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739899 vs. ExPASy Swiss-Prot
Match: MPPB_ARATH (Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.516e-24
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 3
Query:    3 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGA 185
            EGQT+EV+ DHLHATAFQYTPLGRTILGPAQN+K+IT+E LQNYI THYTA RMVIAA+GA
Sbjct:  226 EGQTDEVVLDHLHATAFQYTPLGRTILGPAQNVKSITREDLQNYIKTHYTASRMVIAAAGA 286          
BLAST of CK739899 vs. ExPASy Swiss-Prot
Match: MPPB_NEUCR (Mitochondrial-processing peptidase subunit beta OS=Neurospora crassa GN=pep PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.524e-16
Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 3
Query:    3 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASG 182
            E Q EEV+FDHLHATA+Q+ PLGRTILGP +NI+ IT+  L NYI  +YTA RMV+  +G
Sbjct:  169 EKQLEEVVFDHLHATAYQHQPLGRTILGPRENIRDITRTELVNYIKNNYTADRMVLVGAG 228          
BLAST of CK739899 vs. ExPASy Swiss-Prot
Match: MPPB_RAT (Mitochondrial-processing peptidase subunit beta OS=Rattus norvegicus GN=Pmpcb PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.897e-15
Identity = 36/60 (60.00%), Postives = 49/60 (81.67%), Query Frame = 3
Query:    3 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASG 182
            E   +EV+FD+LHATA+Q T LGRTILGP +NIK+I+++ L +YI THY  PR+V+AA+G
Sbjct:  186 ETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYKGPRIVLAAAG 245          
BLAST of CK739899 vs. ExPASy Swiss-Prot
Match: MPPB_PONAB (Mitochondrial-processing peptidase subunit beta OS=Pongo abelii GN=PMPCB PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.897e-15
Identity = 36/60 (60.00%), Postives = 49/60 (81.67%), Query Frame = 3
Query:    3 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASG 182
            E   +EV+FD+LHATA+Q T LGRTILGP +NIK+I+++ L +YI THY  PR+V+AA+G
Sbjct:  186 ETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYKGPRIVLAAAG 245          
BLAST of CK739899 vs. ExPASy Swiss-Prot
Match: MPPB_HUMAN (Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.897e-15
Identity = 36/60 (60.00%), Postives = 49/60 (81.67%), Query Frame = 3
Query:    3 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASG 182
            E   +EV+FD+LHATA+Q T LGRTILGP +NIK+I+++ L +YI THY  PR+V+AA+G
Sbjct:  186 ETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYKGPRIVLAAAG 245          
BLAST of CK739899 vs. ExPASy Swiss-Prot
Match: MPPB_MOUSE (Mitochondrial-processing peptidase subunit beta OS=Mus musculus GN=Pmpcb PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.089e-15
Identity = 36/60 (60.00%), Postives = 48/60 (80.00%), Query Frame = 3
Query:    3 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASG 182
            E   +EV+FD+LHATA+Q T LGRTILGP +NIK+I ++ L +YI THY  PR+V+AA+G
Sbjct:  186 ETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAG 245          
BLAST of CK739899 vs. ExPASy Swiss-Prot
Match: MPPB_BOVIN (Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.089e-15
Identity = 36/60 (60.00%), Postives = 48/60 (80.00%), Query Frame = 3
Query:    3 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASG 182
            E   +EV+FD+LHATA+Q T LGRTILGP +NIK+I ++ L +YI THY  PR+V+AA+G
Sbjct:  187 ETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAG 246          
BLAST of CK739899 vs. ExPASy Swiss-Prot
Match: MPPB_LENED (Mitochondrial-processing peptidase subunit beta OS=Lentinula edodes GN=mppB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 3
Query:    9 QTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASG 182
            Q EEV+FDHLHA AFQ  PLGRTILGP  NI +I ++ L +YI T+YTA RMV+  +G
Sbjct:  160 QLEEVVFDHLHAVAFQGQPLGRTILGPKNNILSIQRDDLASYIQTNYTADRMVLVGTG 217          
BLAST of CK739899 vs. ExPASy Swiss-Prot
Match: MPPB_DICDI (Mitochondrial-processing peptidase subunit beta OS=Dictyostelium discoideum GN=mppB PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.299e-14
Identity = 34/61 (55.74%), Postives = 49/61 (80.33%), Query Frame = 3
Query:    3 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGA 185
            + + +EV+FD LHA AFQ + LGRTILGP +NIK+IT+E +Q +I+ +YT  R+VI+A+GA
Sbjct:  164 QSKEDEVVFDQLHAAAFQGSALGRTILGPVENIKSITREQIQEFINENYTGDRLVISAAGA 224          
BLAST of CK739899 vs. ExPASy Swiss-Prot
Match: MPPB_SCHPO (Probable mitochondrial-processing peptidase subunit beta OS=Schizosaccharomyces pombe GN=qcr1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13
Identity = 32/57 (56.14%), Postives = 47/57 (82.46%), Query Frame = 3
Query:   15 EEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGA 185
            +EV+FDHLHATA+Q  PLGRTILGP +NI+++T+E L  YI  +Y + RM+I+++G+
Sbjct:  155 DEVVFDHLHATAYQGHPLGRTILGPKENIESLTREDLLQYIKDNYRSDRMIISSAGS 211          
The following BLAST results are available for this feature:
BLAST of CK739899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
MPPB_ARATH3.516e-2483.61Probable mitochondrial-processing peptidase subuni... [more]
MPPB_NEUCR3.524e-1663.33Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_RAT3.897e-1560.00Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_PONAB3.897e-1560.00Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_HUMAN3.897e-1560.00Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_MOUSE5.089e-1560.00Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_BOVIN5.089e-1560.00Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_LENED2.526e-1462.07Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_DICDI3.299e-1455.74Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_SCHPO2.138e-1356.14Probable mitochondrial-processing peptidase subuni... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6291 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739899 ID=CK739899; Name=CK739899; organism=Citrus sinensis; type=EST; length=227bp
TTGAGGGGCAAACAGAGGAAGTCATTTTTGATCATTTGCATGCAACTGCA
TTCCAGTACACTCCTTTGGGGAGAACTATTCTCGGTCCTGCTCAGAATAT
CAAGACAATCACAAAAGAACATCTGCAGAACTATATTCACACTCACTATA
CTGCTCCCAGAATGGTGATTGCTGCTTCTGGAGCTGTGAAGCATGAAGAA
GTTGTTGAGCAAGTGAAGAAATTGTTC
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