CK740007

Overview
NameCK740007
Unique NameCK740007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length329
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8290 contig Csv1_Contig8290:836..1164. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK740007 vs. ExPASy Swiss-Prot
Match: PPOC_TOBAC (Protoporphyrinogen oxidase, chloroplastic OS=Nicotiana tabacum GN=PPXI PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.174e-42
Identity = 83/109 (76.15%), Postives = 95/109 (87.16%), Query Frame = 1 
Query:    1 QEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDNGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYY 327
            +E++  PK PRDPRLPKPKGQTVGSFRKGL MLP+AIS RLGSK+KLSWKLS + K + G Y LTYETPEG+VSL+SRS+VMTVPSYVAS++LRPLSV AA ALS FYY
Sbjct:  265 KERSSTPKAPRDPRLPKPKGQTVGSFRKGLRMLPDAISARLGSKLKLSWKLSSITKSEKGGYHLTYETPEGVVSLQSRSIVMTVPSYVASNILRPLSVAAADALSNFYY 373
[Close]
BLAST of CK740007 vs. ExPASy Swiss-Prot
Match: PPOC_ARATH (Protoporphyrinogen oxidase, chloroplastic OS=Arabidopsis thaliana GN=PPOX PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.839e-42
Identity = 84/109 (77.06%), Postives = 96/109 (88.07%), Query Frame = 1 
Query:    1 QEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDNGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYY 327
            QE+  APK  RDPRLPKP+GQTVGSFRKGL MLPEAIS RLGSKVKLSWKLSG+ KL++G Y+LTYETP+GLVS++S+SVVMTVPS+VAS LLRPLS  AA ALS+ YY
Sbjct:  254 QERKNAPKAERDPRLPKPQGQTVGSFRKGLRMLPEAISARLGSKVKLSWKLSGITKLESGGYNLTYETPDGLVSVQSKSVVMTVPSHVASGLLRPLSESAANALSKLYY 362
[Close]
BLAST of CK740007 vs. ExPASy Swiss-Prot
Match: PPOC_ORYSJ (Protoporphyrinogen oxidase, chloroplastic OS=Oryza sativa subsp. japonica GN=PPOX1 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.035e-40
Identity = 79/109 (72.48%), Postives = 93/109 (85.32%), Query Frame = 1 
Query:    1 QEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDNGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYY 327
            QE+ K PK PRDPRLP PKGQTV SFRKGLTMLP+AI+ RLGSKVKLSWKL+ + K DN  Y+L YETPEG+VS+++++VVMT+PSYVAS +LRPLS DAA ALS FYY
Sbjct:  253 QERGKNPKPPRDPRLPTPKGQTVASFRKGLTMLPDAITSRLGSKVKLSWKLTSITKSDNKGYALVYETPEGVVSVQAKTVVMTIPSYVASDILRPLSSDAADALSIFYY 361
The following BLAST results are available for this feature:
BLAST of CK740007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PPOC_TOBAC2.174e-4276.15Protoporphyrinogen oxidase, chloroplastic OS=Nicot... [more]
PPOC_ARATH2.839e-4277.06Protoporphyrinogen oxidase, chloroplastic OS=Arabi... [more]
PPOC_ORYSJ2.035e-4072.48Protoporphyrinogen oxidase, chloroplastic OS=Oryza... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6501 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740007 ID=CK740007; Name=CK740007; organism=Citrus sinensis; type=EST; length=329bp
CAGGAAAAAAATAAAGCTCCTAAGCAACCTCGAGACCCGCGTCTACCAAA
GCCAAAGGGCCAAACAGTTGGATCTTTTAGGAAGGGACTTACTATGCTGC
CAGAGGCAATATCTAAAAGGTTAGGTAGCAAAGTCAAATTATCTTGGAAG
CTTTCAGGGGTCAAGAAATTGGATAACGGAGAGTATAGTTTGACTTATGA
AACACCAGAAGGATTGGTTTCTCTGCGGAGCAGAAGTGTTGTTATGACAG
TTCCATCTTATGTCGCTAGTAGTCTACTACGTCCACTTTCTGTAGATGCT
GCCGGTGCACTCTCACAATTTTACTACCC
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