CK934248

Overview
NameCK934248
Unique NameCK934248
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934248_ssr11 microsatellite CK934248_ssr11:11..22. BLAST: Citrus ESTs to Prunus persica proteins V1
CK934248_ssr126 microsatellite CK934248_ssr126:126..135. BLAST: Citrus ESTs to Prunus persica proteins V1
CK934248_ssr10 microsatellite CK934248_ssr10:10..21. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10695 contig Csv1_Contig10695:53..901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934248 vs. ExPASy Swiss-Prot
Match: FATB_GOSHI (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Gossypium hirsutum GN=FATB1 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.476e-45
Identity = 99/149 (66.44%), Postives = 103/149 (69.13%), Query Frame = 1
Query:  403 SVAKTKNLGSANLXXXXXXXXXXXLQVKANAQAPSKINGTSVGLTTPAESLKNGDISTSSPPPRTFINQLPDWSMXXXXXXXXXXXXEKQWMMLDWKPRRSDMLVDPFGIGKIVQDGFIFRQNFSXXSYEIGADGTASIETLMNHLQET 849
            S +K K LGS              LQVKANAQAP KINGT V  TTP E  KN D   SSPPPRTFINQLPDWSM            EKQWMMLDWKPRR DM++DPFGIGKIVQDG +F QNFS  SYEIGAD TASIETLMNHLQET
Sbjct:   20 SDSKNKKLGSIK---SKPSVSSGSLQVKANAQAPPKINGT-VASTTPVEGSKNDD-GASSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRPDMVIDPFGIGKIVQDGLVFSQNFSIRSYEIGADQTASIETLMNHLQET 163          
BLAST of CK934248 vs. ExPASy Swiss-Prot
Match: FATB_CUPHO (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Cuphea hookeriana GN=FATB1 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.370e-42
Identity = 86/125 (68.80%), Postives = 95/125 (76.00%), Query Frame = 1
Query:  475 LQVKANAQAPSKINGTSVGLTTPAESLKNGDISTSSPPPRTFINQLPDWSMXXXXXXXXXXXXEKQWMMLDWKPRRSDMLVDPFGIGKIVQDGFIFRQNFSXXSYEIGADGTASIETLMNHLQET 849
            LQVKANA AP KING+ VGL +    LK  + + S+PPPRTFINQLPDWSM            EKQWMMLDWKP+R DMLVDPFG+G IVQDG +FRQNFS  SYEIGAD TASIET+MNHLQET
Sbjct:   45 LQVKANASAPPKINGSPVGLKSGG--LKTQEDAHSAPPPRTFINQLPDWSMLLAAITTVFLAAEKQWMMLDWKPKRPDMLVDPFGLGSIVQDGLVFRQNFSIRSYEIGADRTASIETVMNHLQET 167          
BLAST of CK934248 vs. ExPASy Swiss-Prot
Match: FATB_CINCA (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Cinnamomum camphora GN=FATB1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.050e-11
Identity = 51/128 (39.84%), Postives = 64/128 (50.00%), Query Frame = 1
Query:  475 LQVKA-NAQAPSK-INGTSVGLTTPAESLKNGDISTSSPPPRTFINQLPDWSMXXXXXXXXXXXXEKQWMMLDWKPRRS--DMLVDPFGIGKIVQDGFIFRQNFSXXSYEIGADGTASIETLMNHLQE 846
            LQ++A NAQ   K INGT    T   ESLK                +LPDWSM            EKQW  L+WKP+ +   +L D FG       G +FR+ F+  SYE+G D + SI  +MNHLQE
Sbjct:   32 LQLRAGNAQTSLKMINGTKFSYT---ESLK----------------KLPDWSMLFAVITTIFSAAEKQWTNLEWKPKPNPPQLLDDHFG-----PHGLVFRRTFAIRSYEVGPDRSTSIVAVMNHLQE 135          
BLAST of CK934248 vs. ExPASy Swiss-Prot
Match: FATB_UMBCA (Lauroyl-acyl carrier protein thioesterase, chloroplastic OS=Umbellularia californica GN=FATB1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 49/128 (38.28%), Postives = 63/128 (49.22%), Query Frame = 1
Query:  475 LQVKA-NAQAPSK-INGTSVGLTTPAESLKNGDISTSSPPPRTFINQLPDWSMXXXXXXXXXXXXEKQWMMLDWKPRRS--DMLVDPFGIGKIVQDGFIFRQNFSXXSYEIGADGTASIETLMNHLQE 846
            LQ++A NA    K INGT    T   ESLK                +LPDWSM            EKQW  L+WKP+     +L D FG+      G +FR+ F+  SYE+G D + SI  +MNH+QE
Sbjct:   32 LQLRAGNAPTSLKMINGTKFSYT---ESLK----------------RLPDWSMLFAVITTIFSAAEKQWTNLEWKPKPKLPQLLDDHFGL-----HGLVFRRTFAIRSYEVGPDRSTSILAVMNHMQE 135          
The following BLAST results are available for this feature:
BLAST of CK934248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FATB_GOSHI2.476e-4566.44Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_CUPHO4.370e-4268.80Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_CINCA1.050e-1139.84Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_UMBCA6.805e-1138.28Lauroyl-acyl carrier protein thioesterase, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004261_E01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934248 ID=CK934248; Name=CK934248; organism=Citrus sinensis; type=EST; length=849bp
TTTTTTTTTTCTCTCTCTCTCTACTTTTTTGTTTTTCTCTTTAATTCGAT
TTTTTCAAAGCGAAACTTAACAAAATAATGTTTAAAAAAAAGAGATGAAA
GTTCTACTCAAACGAAAAAGGTAGCGAGAGAGAGATCGTAAACCCTAGAA
GTTAGTGAGAAGCATCCGCATTTGCATTCGCTCGCAGATCCAAATTGAAG
AAGCAAATGAGCTTTTATCATCTTTGTTTATTCTTTTTTCACAGTTTTGT
GTAATTTTTGGTGGCCGGATTTTCTTCGCTATTTTGTTACTCGTAAAATT
AAGGATTACTAGGGCCCTGATCTGTGGTTTACTCTACGGTTCAAGATGGT
TGCTACTGCCGCAGCTTCTGCGTTCTTCCCAGTTTCCTCACCATCTGGGG
ATTCTGTTGCAAAGACCAAAAATCTCGGATCTGCTAATCTGGGAGGTATT
AAGTCAAAATCCTCTTCTGGGAGTTTGCAGGTTAAGGCTAATGCGCAAGC
ACCTTCCAAGATAAATGGTACTTCAGTTGGTTTGACAACACCAGCAGAAA
GTTTGAAGAATGGTGATATCTCCACGTCATCACCTCCTCCTAGGACTTTT
ATTAACCAGTTACCTGACTGGAGTATGCTTCTTGCTGCTATAACAACAAT
CTTCTTGGCAGCAGAGAAGCAGTGGATGATGCTTGATTGGAAACCAAGGC
GATCTGACATGCTTGTGGACCCATTTGGGATTGGGAAAATAGTTCAGGAT
GGTTTCATTTTCCGGCAAAATTTCTCAANNNGATCATATGAGATAGGTGC
TGATGGTACTGCATCTATAGAGACATTAATGAATCATTTACAGGAAACA
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