CK934373

Overview
NameCK934373
Unique NameCK934373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2505 contig Csv1_Contig2505:50..603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: IDND_VITVI (L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSVIVT00012394001 PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 1.005e-46
Identity = 78/109 (71.56%), Postives = 90/109 (82.57%), Query Frame = 3
Query:  183 AWLMGVNTLKIQPFELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNLVSRDKIF 509
            AWL+G+ TLKIQP+ LPSLGPYDV VR KAVGICGSDVH+ KT+RCA+F+VK+PMVIGHECAG+IE+VGSEVK LV GD V LEPGI C RC  C+ G+YNL    K F
Sbjct:   23 AWLLGIKTLKIQPYILPSLGPYDVKVRIKAVGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKNLVAGDRVALEPGISCNRCSLCRNGQYNLCREMKFF 131          

HSP 2 Score: 39.6614 bits (91), Expect = 1.005e-46
Identity = 16/22 (72.73%), Postives = 19/22 (86.36%), Query Frame = 1
Query:  490 CPEIKFFATPPVHGSLANQVVH 555
            C E+KFF +PP +GSLANQVVH
Sbjct:  125 CREMKFFGSPPTNGSLANQVVH 146          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: DHSO_MACFA (Sorbitol dehydrogenase OS=Macaca fascicularis GN=SORD PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 4.160e-24
Identity = 54/106 (50.94%), Postives = 72/106 (67.92%), Query Frame = 3
Query:  195 GVNTLKIQPFELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNLVSRDKIFC 512
            G   L+++ + +P  GP +VL+R  +VGICGSDVHY +  R  +F+VK+PMV+GHE +G +EKVGS VK L PGD V +EPG+     + CK GRYNL S    FC
Sbjct:   16 GPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEEGRIGNFIVKKPMVLGHEASGTVEKVGSLVKHLKPGDRVAIEPGVPRENDEFCKSGRYNL-SPSIFFC 120          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: DHSO_MOUSE (Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 7.095e-24
Identity = 52/98 (53.06%), Postives = 69/98 (70.41%), Query Frame = 3
Query:  195 GVNTLKIQPFELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            G   ++++ + +P LGP DVL++  +VGICGSDVHY +  R  DFVVK+PMV+GHE AG + KVG  VK L PGD V +EPG+     ++CK GRYNL
Sbjct:   16 GPGDIRLENYPIPELGPNDVLLKMHSVGICGSDVHYWEHGRIGDFVVKKPMVLGHEAAGTVTKVGELVKHLKPGDRVAIEPGVPREVDEYCKIGRYNL 113          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: DHSO_RAT (Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sord PE=1 SV=4)

HSP 1 Score: 108.997 bits (271), Expect = 1.581e-23
Identity = 52/98 (53.06%), Postives = 68/98 (69.39%), Query Frame = 3
Query:  195 GVNTLKIQPFELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            G   ++++ + +P LGP DVL++  +VGICGSDVHY +  R  DFVVK+PMV+GHE AG + KVG  VK L PGD V +EPG+     + CK GRYNL
Sbjct:   16 GPGDIRLENYPIPELGPNDVLLKMHSVGICGSDVHYWEHGRIGDFVVKKPMVLGHEAAGTVTKVGPMVKHLKPGDRVAIEPGVPREIDEFCKIGRYNL 113          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: DHSO_HUMAN (Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 1.581e-23
Identity = 54/106 (50.94%), Postives = 71/106 (66.98%), Query Frame = 3
Query:  195 GVNTLKIQPFELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNLVSRDKIFC 512
            G   L+++ + +P  GP +VL+R  +VGICGSDVHY +  R  +F+VK+PMV+GHE +G +EKVGS VK L PGD V +EPG      + CK GRYNL S    FC
Sbjct:   16 GPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNL-SPSIFFC 120          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: DHSO_PONAB (Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.521e-23
Identity = 54/106 (50.94%), Postives = 71/106 (66.98%), Query Frame = 3
Query:  195 GVNTLKIQPFELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNLVSRDKIFC 512
            G   L+++ + +P  GP +VL+R  +VGICGSDVHY +  R  +F+VK+PMV+GHE +G +EKVGS VK L PGD V +EPG      + CK GRYNL S    FC
Sbjct:   16 GPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEDGRIGNFIVKKPMVLGHEASGTVEKVGSLVKHLKPGDRVAIEPGAPRENDEFCKIGRYNL-SPSIFFC 120          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: DHSO_SCHPO (Putative sorbitol dehydrogenase OS=Schizosaccharomyces pombe GN=tms1 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 2.768e-22
Identity = 45/81 (55.56%), Postives = 58/81 (71.60%), Query Frame = 3
Query:  246 YDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            + V V  KA GICGSDVHY K     DF++K+PM++GHE AGV+ +VG  V +L PGD V +EPG +C  CD+C+ GRYNL
Sbjct:   30 HQVKVAIKATGICGSDVHYWKEGGIGDFILKKPMILGHESAGVVVEVGKGVSSLKPGDPVAVEPGCVCRLCDYCRSGRYNL 110          

HSP 2 Score: 25.409 bits (54), Expect = 2.768e-22
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  490 CPEIKFFATPPVHGSL 537
            CP ++F ATPP  G+L
Sbjct:  111 CPHMEFAATPPYDGTL 126          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: DHSO_BOVIN (Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 5.085e-22
Identity = 53/106 (50.00%), Postives = 70/106 (66.04%), Query Frame = 3
Query:  195 GVNTLKIQPFELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNLVSRDKIFC 512
            G   L+++ + +P  GP +VL++  +VGICGSDVHY +  R  DFVVK+PMV+GHE +G + KVGS V+ L PGD V +EPG      + CK GRYNL S    FC
Sbjct:   15 GPGDLRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQHGRIGDFVVKKPMVLGHEASGTVVKVGSLVRHLQPGDRVAIEPGAPRETDEFCKIGRYNL-SPTIFFC 119          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: DHSO_BACSU (Sorbitol dehydrogenase OS=Bacillus subtilis GN=gutB PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 5.085e-22
Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = 3
Query:  207 LKIQPFELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            +KI+   +P +   +VL++  AVGICGSD+HY    R  ++VV++P ++GHECAG I  VGS V     GD V +EPG+ C RC+ CK GRYNL
Sbjct:   20 IKIETLPVPDINHDEVLIKVMAVGICGSDLHYYTNGRIGNYVVEKPFILGHECAGEIAAVGSSVDQFKVGDRVAVEPGVTCGRCEACKEGRYNL 113          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: DHSO_SHEEP (Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.342e-21
Identity = 52/106 (49.06%), Postives = 70/106 (66.04%), Query Frame = 3
Query:  195 GVNTLKIQPFELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNLVSRDKIFC 512
            G   L+++ + +P  GP +VL++  +VGICGSDVHY +  R  DFVVK+PMV+GHE +G + KVGS V+ L PGD V ++PG      + CK GRYNL S    FC
Sbjct:   14 GPGDLRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQG-RIGDFVVKKPMVLGHEASGTVVKVGSLVRHLQPGDRVAIQPGAPRQTDEFCKIGRYNL-SPTIFFC 117          
The following BLAST results are available for this feature:
BLAST of CK934373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
IDND_VITVI1.005e-4671.56L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSV... [more]
DHSO_MACFA4.160e-2450.94Sorbitol dehydrogenase OS=Macaca fascicularis GN=S... [more]
DHSO_MOUSE7.095e-2453.06Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=... [more]
DHSO_RAT1.581e-2353.06Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sor... [more]
DHSO_HUMAN1.581e-2350.94Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=... [more]
DHSO_PONAB3.521e-2350.94Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=... [more]
DHSO_SCHPO2.768e-2255.56Putative sorbitol dehydrogenase OS=Schizosaccharom... [more]
DHSO_BOVIN5.085e-2250.00Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 ... [more]
DHSO_BACSU5.085e-2248.94Sorbitol dehydrogenase OS=Bacillus subtilis GN=gut... [more]
DHSO_SHEEP7.342e-2149.06Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_H01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934373 ID=CK934373; Name=CK934373; organism=Citrus sinensis; type=EST; length=556bp
GGGGGCGGCCGAATCAAATCATATCCCATATCCAGAATCAGAATAAATGG
TAGCTTAAAATGTTNNNTACAGAGTGAAGTCTCTTCTGTGCACTTGTGTT
TTTGAAGGGTAAAAAGCAAATATGGGCAAAGGAGGGATGTCACAAGGAGA
AAAGAAGGATGGAGAATAAGTTAACATGGCATGCTTGGCTTATGGGTGTC
AACACCCTCAAGATTCAACCTTTTGAGCTTCCTTCTCTGGGACCATATGA
TGTTTTAGTCAGGAAGAAAGCCGTTGGTATTTGTGGAAGTGATGTGCATT
ATCTCAAGACCTTGAGGTGTGCCGATTTTGTTGTGAAAGAACCTATGGTG
ATTGGGCACGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGGTGAA
GACTTTGGTGCCCGGTGACCATGTGCCCCTGGAACCCGGGATCATTTGCT
GGCGATGCGATCACTGCAAAGGAGGTCGATACAATTTAGTGTCCAGAGAT
AAAATTTTTTGCAACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGGTGG
TGCATC
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